Basic Statistics
Measure | Value |
---|---|
Filename | SRR937758_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1198178 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8343 | 0.6963072264721936 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7277 | 0.6073388094256447 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5241 | 0.4374141404699469 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 2217 | 0.18503093864183784 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1861 | 0.15531915959064513 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1846 | 0.15406725878792635 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1477 | 0.123270499041044 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7855 | 0.0 | 27.287025 | 1 |
CTCGCGA | 35 | 0.0083868485 | 27.147173 | 36-37 |
GTATCAA | 10585 | 0.0 | 25.457634 | 1 |
GTATAGA | 325 | 0.0 | 24.859444 | 1 |
GAGTACT | 6615 | 0.0 | 23.481522 | 12-13 |
GTACATG | 7460 | 0.0 | 22.297443 | 1 |
GTACTTT | 6970 | 0.0 | 22.21554 | 14-15 |
TACATGG | 7735 | 0.0 | 21.254505 | 2 |
AGTACTT | 6920 | 0.0 | 21.210976 | 12-13 |
GTATAGG | 405 | 0.0 | 21.122404 | 1 |
ATCAACG | 12735 | 0.0 | 21.117994 | 3 |
TATCAAC | 12860 | 0.0 | 21.06052 | 2 |
TCAACGC | 12785 | 0.0 | 21.035406 | 4 |
CAACGCA | 12920 | 0.0 | 20.815609 | 5 |
ACATGGG | 7630 | 0.0 | 20.737427 | 3 |
AACGCAG | 13145 | 0.0 | 20.523897 | 6 |
TACCTGG | 840 | 0.0 | 20.36378 | 2 |
GTACCTG | 820 | 0.0 | 20.285234 | 1 |
CGATCGT | 200 | 0.0 | 20.186499 | 24-25 |
TAGACTG | 450 | 0.0 | 20.062096 | 5 |