Basic Statistics
Measure | Value |
---|---|
Filename | SRR937739_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 696987 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9750 | 1.398878314803576 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8350 | 1.198013736267678 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6508 | 0.9337333407940176 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2874 | 0.41234628479440794 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2012 | 0.2886710942958764 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1915 | 0.2747540484973177 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1569 | 0.2251118026591601 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1141 | 0.16370463150675693 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1051 | 0.15079190860087777 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 949 | 0.13615748930754806 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 900 | 0.12912722905879165 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 7000 | 0.0 | 30.41709 | 1 |
GGTATCA | 4730 | 0.0 | 30.344748 | 1 |
CGACTAC | 35 | 0.008386795 | 27.146423 | 88-89 |
GTACATG | 4340 | 0.0 | 24.420404 | 1 |
TATCAAC | 8815 | 0.0 | 24.039507 | 2 |
ATCAACG | 8830 | 0.0 | 23.891052 | 3 |
TCAACGC | 8815 | 0.0 | 23.877806 | 4 |
CAACGCA | 8885 | 0.0 | 23.689686 | 5 |
ACATGGG | 4170 | 0.0 | 23.58562 | 3 |
AGTACTT | 5830 | 0.0 | 23.301605 | 12-13 |
AACGCAG | 9070 | 0.0 | 23.198168 | 6 |
TACATGG | 4485 | 0.0 | 22.67067 | 2 |
GAGTACT | 5725 | 0.0 | 22.277023 | 12-13 |
CCTGTAC | 245 | 7.481503E-9 | 21.332394 | 3 |
ACGCAGA | 9965 | 0.0 | 21.068487 | 7 |
CGCAGAG | 9965 | 0.0 | 21.02082 | 8 |
GTACTTT | 6075 | 0.0 | 20.874794 | 14-15 |
CATGGGT | 640 | 0.0 | 20.786964 | 4 |
GGTACTC | 185 | 6.546694E-6 | 20.540293 | 8 |
AGAGTAC | 8540 | 0.0 | 20.412518 | 10-11 |