SRR937688_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937688_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	191946
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1393	0.7257249434736853	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1122	0.58453940170673	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	754	0.3928188136246653	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	630	0.3282173111187522	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	296	0.15421003823992166	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	289	0.15056317922749107	No Hit
GCTAAGGGTAGTTTATTTTGGACACAGACATATTAGGGCATTGTCACCAC	266	0.13858064247236201	No Hit
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA	217	0.11305262938534798	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	213	0.11096870994967334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGCT	25	5.2645682E-5	75.99875	8
ATTCGTA	30	1.2969083E-4	63.348797	5
TTCGTAG	30	1.2985822E-4	63.332287	6
TAAGGTG	40	7.5107528E-6	59.389496	5
TCGTAGC	35	2.7823055E-4	54.28482	7
GGGTAGG	55	4.933076E-5	43.20362	1
AGCACCG	45	9.593473E-4	42.232533	5
TATTCGT	45	9.593473E-4	42.232533	4
GTATAGC	50	0.0016084672	38.019188	1
TACCGCA	50	0.0016125933	37.999374	7
CACTAGT	90	5.6542194E-7	36.953465	4
GGTAAGG	65	1.3221632E-4	36.547386	3
GTAAGGT	65	1.3221632E-4	36.547386	4
CTAGTAC	55	0.0025712145	34.55389	3
ATATTCG	55	0.0025712145	34.55389	3
TAGTCGC	55	0.002574504	34.544888	7
AGTCGCT	55	0.002574504	34.544888	8
GATTTCG	30	0.00394802	31.666143	62-63
CTAGTCG	60	0.0039431434	31.666143	6
TCTCGGT	30	0.00394802	31.666143	12-13