Basic Statistics
Measure | Value |
---|---|
Filename | SRR937559_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1062063 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7871 | 0.741104812049756 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6709 | 0.6316951065991376 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4512 | 0.4248335550715918 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1680 | 0.15818270667559267 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1218 | 0.1146824623398047 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3625 | 0.0 | 56.908424 | 1 |
GTATCAA | 6455 | 0.0 | 41.899693 | 1 |
ATCAACG | 8610 | 0.0 | 31.45892 | 3 |
TATCAAC | 8685 | 0.0 | 31.132536 | 2 |
TCAACGC | 8775 | 0.0 | 30.867382 | 4 |
CAACGCA | 8845 | 0.0 | 30.623095 | 5 |
AACGCAG | 9030 | 0.0 | 30.03419 | 6 |
GTAAGGT | 385 | 0.0 | 28.388285 | 4 |
CGATCGT | 110 | 1.8189894E-12 | 28.0665 | 24-25 |
ATGGGTA | 410 | 0.0 | 27.816305 | 5 |
TGGTATC | 1515 | 0.0 | 26.66112 | 2 |
ACGCAGA | 10400 | 0.0 | 26.033318 | 7 |
CGCAGAG | 10405 | 0.0 | 26.02081 | 8 |
GTACATG | 6960 | 0.0 | 25.405548 | 1 |
TACATGG | 7040 | 0.0 | 24.90725 | 2 |
TAAGGTG | 460 | 0.0 | 24.792795 | 5 |
GCAGAGT | 11050 | 0.0 | 24.07209 | 9 |
ACATGGG | 6915 | 0.0 | 24.05182 | 3 |
GGTAAGG | 445 | 0.0 | 23.492798 | 3 |
GAGTACT | 6885 | 0.0 | 23.215025 | 12-13 |