Basic Statistics
Measure | Value |
---|---|
Filename | SRR937545_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 545016 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5074 | 0.9309818427348922 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4167 | 0.7645647100268615 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2966 | 0.5442042068489732 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 939 | 0.17228851997005593 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 793 | 0.14550031558706533 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 716 | 0.1313722899878169 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1860 | 0.0 | 60.31541 | 1 |
GTATCAA | 3355 | 0.0 | 41.231552 | 1 |
TAGACCC | 50 | 0.0016104017 | 38.022373 | 5 |
CGACCCG | 55 | 0.0025710005 | 34.565792 | 5 |
GGACCGA | 70 | 2.0503692E-4 | 33.932915 | 6 |
TGGACCG | 60 | 0.0039377706 | 31.685308 | 5 |
TATCAAC | 4480 | 0.0 | 30.869112 | 2 |
ATCAACG | 4490 | 0.0 | 30.797527 | 3 |
TCAACGC | 4500 | 0.0 | 30.731918 | 4 |
CAACGCA | 4590 | 0.0 | 30.132107 | 5 |
AACGCAG | 4690 | 0.0 | 29.577345 | 6 |
TGGTATC | 810 | 0.0 | 29.335545 | 2 |
GTGGTAT | 785 | 0.0 | 29.067041 | 1 |
GTACATG | 3315 | 0.0 | 26.24199 | 1 |
ACGCAGA | 5295 | 0.0 | 26.018438 | 7 |
CGCAGAG | 5325 | 0.0 | 25.871857 | 8 |
TACATGG | 3285 | 0.0 | 25.606316 | 2 |
AGGACCG | 100 | 0.001646874 | 23.763983 | 5 |
ATAGGCC | 100 | 0.0016486414 | 23.759604 | 3 |
GTGTACG | 120 | 1.707715E-4 | 23.753038 | 9 |