SRR937499_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937499_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	297669
Sequences flagged as poor quality	0
Sequence length	101
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3240	1.0884573133245317	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2348	0.7887956085450618	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1975	0.6634886400666512	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1192	0.4004447893465561	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	665	0.22340250412370785	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	589	0.1978707893667127	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	512	0.17200313099449388	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	403	0.1353852769351192	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	397	0.13336961524377747	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	329	0.11052544940857126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGT	20	0.0020696726	71.27502	6
GGTATCA	1240	0.0	44.09017	1
GTATCAA	2045	0.0	35.103405	1
GCTAAGG	55	0.002565754	34.575058	1
GCGTAAA	55	0.002565754	34.575058	1
CGTAAAA	65	0.005831977	29.236105	2
TAGGGTC	65	0.00583678	29.231184	4
ACGCAGC	85	6.3764973E-4	27.955696	8
TATCAAC	2595	0.0	27.64474	2
TCAACGC	2615	0.0	27.610334	4
ATCAACG	2605	0.0	27.53398	3
CAACGCA	2645	0.0	27.122154	5
AACGCAG	2660	0.0	26.79512	6
CTACGGC	45	8.94609E-4	26.387041	74-75
GTACATG	1305	0.0	24.772167	1
GTATAGG	155	1.3943118E-6	24.537138	1
CGCAGAG	2890	0.0	24.173454	8
ACGCAGA	2915	0.0	24.129173	7
TCTCGCC	70	1.7762488E-5	23.752338	42-43
ATAGGAC	100	0.0016506324	23.750336	3