SRR937498_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937498_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	265515
Sequences flagged as poor quality	0
Sequence length	101
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3036	1.1434382238291623	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2220	0.8361109541833796	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1894	0.7133306969474418	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1229	0.4628740372483664	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	613	0.2308720787902755	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	510	0.1920795435286142	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	405	0.15253375515507597	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	400	0.1506506223753837	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	376	0.14161158503286067	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	335	0.12616989623938382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATGG	65	2.5728186E-6	43.868362	1
GGTATCA	1175	0.0	42.87277	1
TATTCCG	60	8.2763945E-5	39.580975	7
TAGAGCA	50	0.0016095629	38.01925	4
CGCAGAA	50	0.0016155427	37.990574	9
GTATCAA	1945	0.0	36.895287	1
GCGCACA	30	0.0039429106	31.676731	52-53
GTATTGA	80	4.4711365E-4	29.702536	1
ATCAACG	2455	0.0	29.230684	3
ACAGTGC	65	0.00583777	29.229029	8
TCAACGC	2465	0.0	29.112103	4
CAACGCA	2520	0.0	28.288132	5
AACGCAG	2560	0.0	28.201445	6
TATCAAC	2545	0.0	28.010254	2
ATAGAGC	70	0.008359451	27.156607	3
CATGGGG	420	0.0	27.156605	4
GTACATG	1090	0.0	27.032034	1
ATGGGAT	255	0.0	26.09164	5
GTATAAA	165	8.3182385E-8	25.922215	1
TACATGG	1075	0.0	25.64089	2