Basic Statistics
Measure | Value |
---|---|
Filename | SRR937458_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1060013 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13745 | 1.2966822105011921 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9943 | 0.9380073640606295 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7140 | 0.6735766448147334 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2194 | 0.20697859365875704 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2158 | 0.20358240889498525 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1990 | 0.18773354666405034 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1516 | 0.14301711394105543 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 1365 | 0.12877200562634608 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1287 | 0.12141360530484059 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 1079 | 0.10179120444749262 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1071 | 0.10103649672221 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8045 | 0.0 | 34.637768 | 1 |
GTATCAA | 12240 | 0.0 | 33.450306 | 1 |
TATCAAC | 15310 | 0.0 | 26.761156 | 2 |
ATCAACG | 15210 | 0.0 | 26.748339 | 3 |
TCAACGC | 15350 | 0.0 | 26.444954 | 4 |
GTACATG | 8790 | 0.0 | 26.346228 | 1 |
CAACGCA | 15540 | 0.0 | 26.121626 | 5 |
TACATGG | 8805 | 0.0 | 26.01899 | 2 |
AACGCAG | 15715 | 0.0 | 25.877762 | 6 |
GAGTACT | 9235 | 0.0 | 24.203016 | 12-13 |
ACATGGG | 9030 | 0.0 | 24.106268 | 3 |
CTAAGGG | 300 | 0.0 | 23.765272 | 2 |
ACGCAGA | 17405 | 0.0 | 23.228592 | 7 |
CGCAGAG | 17440 | 0.0 | 23.100252 | 8 |
AGTACTT | 9450 | 0.0 | 22.87317 | 12-13 |
CATGGGG | 2475 | 0.0 | 22.470049 | 4 |
GTACTTT | 9890 | 0.0 | 22.455984 | 14-15 |
CATGGGA | 6385 | 0.0 | 22.110006 | 4 |
GCAGAGT | 17935 | 0.0 | 22.091846 | 9 |
GTCGGGA | 365 | 0.0 | 20.835308 | 2 |