Basic Statistics
Measure | Value |
---|---|
Filename | SRR937445_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2409473 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7813 | 0.3242617784054853 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5779 | 0.23984497854925121 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3735 | 0.15501315017848302 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 3566 | 0.1479991682828569 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3995 | 0.0 | 51.548195 | 1 |
GTATCAA | 7510 | 0.0 | 43.507004 | 1 |
ATCAACG | 9475 | 0.0 | 34.067722 | 3 |
TCAACGC | 9520 | 0.0 | 33.85816 | 4 |
TATCAAC | 9755 | 0.0 | 33.090557 | 2 |
CAACGCA | 9755 | 0.0 | 33.037006 | 5 |
AACGCAG | 9960 | 0.0 | 32.337517 | 6 |
ACGCAGA | 11360 | 0.0 | 28.103691 | 7 |
CGCAGAG | 11445 | 0.0 | 27.686842 | 8 |
GTACATG | 8240 | 0.0 | 25.857895 | 1 |
GCAGAGT | 12165 | 0.0 | 25.657104 | 9 |
TACATGG | 8120 | 0.0 | 25.3509 | 2 |
ACATGGG | 8325 | 0.0 | 24.040882 | 3 |
GAGTACT | 7000 | 0.0 | 22.224243 | 12-13 |
AGAGTAC | 11270 | 0.0 | 21.834671 | 10-11 |
CAGAGTA | 12055 | 0.0 | 20.629576 | 10-11 |
AGTACTT | 7700 | 0.0 | 20.574005 | 12-13 |
GTACTTT | 7720 | 0.0 | 19.90353 | 14-15 |
CATGGGG | 4865 | 0.0 | 19.641914 | 4 |
TGGTATC | 2040 | 0.0 | 19.109322 | 2 |