Basic Statistics
Measure | Value |
---|---|
Filename | SRR937425_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2159701 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16024 | 0.7419545575984824 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 13911 | 0.644116940261638 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13146 | 0.608695370331356 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8800 | 0.4074638109627212 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 5829 | 0.2698984720570116 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 5273 | 0.24415416763709422 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 3928 | 0.18187702834790556 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 3914 | 0.1812287904668285 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 3906 | 0.18085836882049877 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 3277 | 0.15173396687782242 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3088 | 0.14298275548328215 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 3053 | 0.14136216078058952 | No Hit |
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA | 2906 | 0.13455566302928043 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 2885 | 0.13358330620766484 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 2312 | 0.10705185578929677 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGTACT | 13445 | 0.0 | 24.323593 | 12-13 |
GTACATG | 13290 | 0.0 | 23.388853 | 1 |
ATGGGCG | 265 | 3.092282E-11 | 23.304642 | 5 |
GTACTTT | 14050 | 0.0 | 23.17425 | 14-15 |
TACATGG | 13190 | 0.0 | 23.014471 | 2 |
ACATGGG | 13235 | 0.0 | 21.967085 | 3 |
AGTACTT | 13915 | 0.0 | 21.86354 | 12-13 |
AGAGTAC | 21710 | 0.0 | 20.62083 | 10-11 |
ACTTTTT | 16245 | 0.0 | 20.364603 | 16-17 |
TACTTTT | 15545 | 0.0 | 19.55527 | 14-15 |
GTATCAA | 32345 | 0.0 | 19.293621 | 1 |
CATGGGA | 8365 | 0.0 | 18.513845 | 4 |
CATGGGG | 4345 | 0.0 | 18.040108 | 4 |
GGTATCA | 26035 | 0.0 | 17.543732 | 1 |
CATGGGC | 2310 | 0.0 | 17.480421 | 4 |
CAACGCA | 36400 | 0.0 | 17.018496 | 5 |
TCAACGC | 36400 | 0.0 | 16.992393 | 4 |
ATCAACG | 36635 | 0.0 | 16.89636 | 3 |
AACGCAG | 37000 | 0.0 | 16.726969 | 6 |
TATCAAC | 37275 | 0.0 | 16.64449 | 2 |