Basic Statistics
Measure | Value |
---|---|
Filename | SRR937413_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1504661 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14547 | 0.9667958430503615 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10761 | 0.7151777044796137 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7777 | 0.5168606084692831 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 2864 | 0.19034187767211352 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2466 | 0.16389073685036032 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 2345 | 0.1558490583593248 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 2295 | 0.152526050718401 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 2089 | 0.1388352592377951 | No Hit |
GCTTGTACTCTGCGTTGATACCACTGCTTGTACTCTGCGTTGATACCACT | 1913 | 0.1271382723417434 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 1663 | 0.11052323413712457 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1644 | 0.10926049123357355 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGTTGCG | 60 | 0.003939366 | 31.686295 | 5 |
GTATCAA | 17955 | 0.0 | 29.678425 | 1 |
GGTATCA | 12305 | 0.0 | 25.76706 | 1 |
GTACATG | 12480 | 0.0 | 25.672369 | 1 |
TACATGG | 12350 | 0.0 | 25.663757 | 2 |
AGTACTT | 11320 | 0.0 | 24.486435 | 12-13 |
ACATGGG | 12615 | 0.0 | 24.25747 | 3 |
ATCAACG | 22035 | 0.0 | 24.000978 | 3 |
TATCAAC | 22165 | 0.0 | 23.9682 | 2 |
TCAACGC | 22105 | 0.0 | 23.930561 | 4 |
CAACGCA | 22275 | 0.0 | 23.72738 | 5 |
GAGTACT | 11205 | 0.0 | 23.677856 | 12-13 |
AACGCAG | 22640 | 0.0 | 23.396908 | 6 |
CATATAG | 245 | 2.9649527E-10 | 23.273518 | 3 |
ATGGGCG | 190 | 3.2687421E-7 | 22.513947 | 5 |
GTACTTT | 11925 | 0.0 | 22.167841 | 14-15 |
CATGGGA | 8875 | 0.0 | 22.010082 | 4 |
TACTTTT | 12890 | 0.0 | 21.466421 | 14-15 |
ACGCAGA | 24580 | 0.0 | 21.433605 | 7 |
CGCAGAG | 24580 | 0.0 | 21.316935 | 8 |