Basic Statistics
Measure | Value |
---|---|
Filename | SRR937367_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 885005 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7570 | 0.855362399082491 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5739 | 0.6484709125937141 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4475 | 0.5056468607521991 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 1451 | 0.16395387596680244 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1357 | 0.15333246704820877 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1299 | 0.14677883175801268 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1220 | 0.13785232851791798 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 9680 | 0.0 | 28.373402 | 1 |
GGTATCA | 6685 | 0.0 | 25.376152 | 1 |
GCACCGT | 135 | 1.3424291E-5 | 24.629263 | 6 |
AGTACTT | 6055 | 0.0 | 23.731377 | 12-13 |
TATCAAC | 11590 | 0.0 | 23.648525 | 2 |
GAGTACT | 5925 | 0.0 | 23.610687 | 12-13 |
ATCAACG | 11585 | 0.0 | 23.49472 | 3 |
CAACGCA | 11705 | 0.0 | 23.294434 | 5 |
TCAACGC | 11705 | 0.0 | 23.25385 | 4 |
GTACATG | 7035 | 0.0 | 23.032932 | 1 |
AACGCAG | 11845 | 0.0 | 23.017807 | 6 |
GTACTTT | 6225 | 0.0 | 22.471554 | 14-15 |
TACATGG | 7240 | 0.0 | 22.307558 | 2 |
GTATAGG | 305 | 9.094947E-12 | 21.811579 | 1 |
ACATGGG | 7050 | 0.0 | 21.359045 | 3 |
TACCTGG | 620 | 0.0 | 20.686346 | 2 |
ACGCAGA | 13165 | 0.0 | 20.638914 | 7 |
CGCAGAG | 13160 | 0.0 | 20.61066 | 8 |
TACTTTT | 6910 | 0.0 | 20.587608 | 14-15 |
CCTAGAC | 210 | 8.5996544E-7 | 20.35799 | 3 |