SRR937311_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937311_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88833
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	692	0.7789897898303558	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	619	0.696813121249986	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	349	0.3928720182814945	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	253	0.2848040705593642	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	190	0.2138844798667162	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	188	0.2116330642891718	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	92	0.10356511656704151	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	89	0.10018799320072495	No Hit
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA	89	0.10018799320072495	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGGG	25	5.2485655E-5	76.0	2
CTTGGTA	20	0.0020677606	71.25	2
TAAGGGT	30	1.2946523E-4	63.33333	3
TCCGTTC	25	0.0050060716	57.0	8
AGCAGTA	25	0.0050060716	57.0	5
AAGGGTA	35	2.7739216E-4	54.285717	4
GCTAAGG	35	2.7739216E-4	54.285717	1
AGGGTAG	45	1.5045658E-5	52.777775	5
GGGTAGT	45	9.5770956E-4	42.22222	6
ACAGGTG	45	9.5770956E-4	42.22222	5
TAGTTTA	50	0.0016077975	38.0	9
CATGGGC	65	1.3183383E-4	36.538464	4
GGTAGTT	55	0.0025668812	34.545452	7
ATGGGAC	75	3.0557942E-4	31.666668	5
ATGGGAG	120	1.4794205E-7	31.666664	5
GGTGTGC	60	0.0039315205	31.666664	8
GATCAGG	60	0.0039315205	31.666664	1
TTGGTAC	30	0.0039420426	31.666664	46-47
AGTAGAT	60	0.0039315205	31.666664	2
GGTATCA	620	0.0	31.411291	1