SRR937309_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937309_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	104812
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1059	1.010380490783498	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	819	0.7813990764416289	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	484	0.46177918558943637	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	244	0.23279777124756706	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	134	0.127847956340877	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	134	0.127847956340877	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	119	0.11353661794451017	No Hit
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT	112	0.10685799335953898	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	111	0.10590390413311453	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	108	0.10304163645384115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGACA	20	0.0020693254	71.24534	6
GCGACAG	25	0.0050098435	56.99627	7
GAGCGCT	25	0.0050098435	56.99627	9
ACATAGA	35	2.7705368E-4	54.308144	1
GGTATCA	465	0.0	53.14023	1
TAGACAG	45	9.56541E-4	42.23967	5
GTATCAA	825	0.0	39.743687	1
GTATTAA	55	0.0025637483	34.55973	1
GTTATAC	55	0.0025637483	34.55973	1
ATCAACG	960	0.0	33.659737	3
TCAACGC	960	0.0	33.659737	4
CAACGCA	985	0.0	33.287865	5
AACGCAG	990	0.0	33.103893	6
TATCAAC	1005	0.0	33.098248	2
ATGGGAG	125	2.114648E-7	30.41256	5
ACGCAGA	1120	0.0	29.261477	7
ATAGATC	65	0.005808359	29.242847	3
TGGGAGC	65	0.005821971	29.228857	6
CGCAGAG	1130	0.0	29.002525	8
GCAGAGT	1200	0.0	27.310709	9