SRR937309_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937309_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	104812
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	823	0.7852154333473267	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	681	0.649734763195054	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	443	0.4226615273060337	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	302	0.28813494638018544	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	235	0.22421096820974695	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	205	0.1955882914170133	No Hit
GCTAAGGGTAGTTTATTTTGGACACAGACATATTAGGGCATTGTCACCAC	133	0.12689386711445255	No Hit
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA	118	0.11258252871808572	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107	0.10208754722741671	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGC	20	0.0020696293	71.24284	9
AGGGTAG	35	2.7776163E-4	54.280262	5
CTAAGGG	35	2.7776163E-4	54.280262	2
TATATCA	40	5.368316E-4	47.495228	5
AAGGGTA	40	5.368316E-4	47.495228	4
TAAGGGT	45	9.589761E-4	42.21798	3
TACTCAC	25	0.0016098182	38.01432	90-91
GTACCTT	50	0.0016099161	37.996185	6
TAGTTTA	50	0.0016099161	37.996185	9
GCTAAGG	55	0.002546265	34.60803	1
ATGGGGA	55	0.0025702526	34.541985	5
GGGTAGT	55	0.0025702526	34.541985	6
GGTATCA	700	0.0	30.591026	1
CATGGGG	140	1.6765625E-8	30.532646	4
GGTAGTT	65	0.0058230436	29.227833	7
CTGGACT	65	0.0058230436	29.227833	4
GTATATG	85	6.3009834E-4	27.991789	1
CTCCTGG	70	0.008283899	27.192022	1
TACATGG	585	0.0	25.980295	2
GTACATG	600	0.0	25.379223	1