SRR937307_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937307_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	155844
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	774	0.49665049665049665	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	641	0.41130874464207795	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	547	0.3509920176586843	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	433	0.2778419445086112	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	270	0.17325017325017325	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	171	0.10972510972510972	No Hit
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA	168	0.10780010780010779	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATAGT	25	0.005008057	57.01464	1
ACGCAGT	25	0.005014427	56.996346	8
CAGTACC	55	4.9453683E-5	43.179047	4
GTATTGG	45	9.587303E-4	42.233067	1
AGTACCA	50	0.0016120389	37.997562	5
CAGGGGT	55	0.0025736254	34.543236	4
TAGAAGG	60	0.003941806	31.664635	4
TAAAAGC	60	0.003941806	31.664635	3
TATACCA	90	2.4007497E-5	31.664635	5
CTCTACC	65	0.0058306106	29.228891	9
TACACTC	65	0.0058306106	29.228891	5
TCCTATG	70	0.008372333	27.141115	2
CCCACAC	90	8.916075E-4	26.387196	3
GTATCAA	1225	0.0	25.210554	1
AGAACAG	120	1.7023268E-4	23.748476	5
TCCAGAC	140	1.767584E-5	23.748476	3
ACCTGTG	105	0.0021885883	22.617594	7
CAACGCA	1350	0.0	22.517073	5
TCAACGC	1350	0.0	22.517073	4
ATCAACG	1355	0.0	22.433985	3