SRR937306_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937306_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	140895
Sequences flagged as poor quality	0
Sequence length	101
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	835	0.5926399091522055	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	655	0.46488519819723906	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	400	0.28389935767770325	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	264	0.18737357606728414	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	210	0.14904716278079422	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	175	0.12420596898399516	No Hit
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT	164	0.11639873664785834	No Hit
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC	164	0.11639873664785834	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	150	0.10646225912913873	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCC	25	0.0050054607	57.019203	7
CTAAGGC	60	8.237289E-5	39.59667	3
GGTATCA	540	0.0	36.089798	1
GTATCAA	830	0.0	35.506508	1
CTTATAT	70	2.040171E-4	33.940002	2
TATATCT	60	0.0039259335	31.688606	4
GACAGGT	65	0.005817289	29.240616	7
TTATATC	65	0.005817289	29.240616	3
TCAACGC	1015	0.0	29.034878	4
TATCAAC	1000	0.0	28.98476	2
CAACGCA	1020	0.0	28.89255	5
ATCAACG	1025	0.0	28.741388	3
AACGCAG	1040	0.0	28.326845	6
CAATGCA	85	6.3664804E-4	27.95059	9
AATACAT	70	0.008338756	27.161661	5
ATACCAT	70	0.008353246	27.152	6
CTGTGCA	125	7.311577E-6	26.608961	9
CCACACT	90	8.872426E-4	26.40717	4
ACGCAGA	1130	0.0	26.070726	7
CTTGGAC	110	9.3972136E-5	25.91782	3