SRR937295_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937295_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1035
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT	15	1.4492753623188406	No Hit
ATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTT	14	1.3526570048309179	RNA PCR Primer, Index 33 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT	13	1.2560386473429952	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12	1.1594202898550725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11	1.0628019323671498	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10	0.966183574879227	No Hit
TCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTG	10	0.966183574879227	RNA PCR Primer, Index 31 (96% over 29bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10	0.966183574879227	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT	9	0.8695652173913043	No Hit
ACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCT	9	0.8695652173913043	RNA PCR Primer, Index 23 (96% over 25bp)
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT	8	0.7729468599033816	TruSeq Adapter, Index 1 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT	7	0.6763285024154589	No Hit
ATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTT	7	0.6763285024154589	RNA PCR Primer, Index 31 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT	7	0.6763285024154589	No Hit
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGCTTG	7	0.6763285024154589	RNA PCR Primer, Index 23 (96% over 30bp)
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT	6	0.5797101449275363	No Hit
ACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCT	6	0.5797101449275363	RNA PCR Primer, Index 31 (95% over 24bp)
ATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTT	6	0.5797101449275363	RNA PCR Primer, Index 23 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTT	6	0.5797101449275363	RNA PCR Primer, Index 27 (95% over 23bp)
TCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTG	6	0.5797101449275363	TruSeq Adapter, Index 1 (96% over 28bp)
TGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCAC	5	0.4830917874396135	No Hit
TCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTG	5	0.4830917874396135	RNA PCR Primer, Index 33 (96% over 29bp)
CACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTG	5	0.4830917874396135	RNA PCR Primer, Index 38 (95% over 24bp)
TCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTG	4	0.3864734299516908	RNA PCR Primer, Index 46 (96% over 28bp)
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT	4	0.3864734299516908	TruSeq Adapter, Index 11 (95% over 21bp)
TCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTG	4	0.3864734299516908	TruSeq Adapter, Index 3 (96% over 28bp)
ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCT	4	0.3864734299516908	RNA PCR Primer, Index 1 (95% over 23bp)
ACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCT	4	0.3864734299516908	RNA PCR Primer, Index 33 (95% over 24bp)
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCT	4	0.3864734299516908	RNA PCR Primer, Index 11 (95% over 23bp)
TCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTTCTGCTTG	4	0.3864734299516908	RNA PCR Primer, Index 27 (96% over 30bp)
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT	3	0.2898550724637681	No Hit
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT	3	0.2898550724637681	TruSeq Adapter, Index 3 (95% over 21bp)
ACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGC	3	0.2898550724637681	RNA PCR Primer, Index 38 (96% over 25bp)
TTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTC	3	0.2898550724637681	No Hit
ATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT	3	0.2898550724637681	RNA PCR Primer, Index 39 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTT	3	0.2898550724637681	TruSeq Adapter, Index 10 (95% over 21bp)
TCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTG	3	0.2898550724637681	TruSeq Adapter, Index 11 (96% over 28bp)
TATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCT	3	0.2898550724637681	RNA PCR Primer, Index 33 (95% over 21bp)
ACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCT	3	0.2898550724637681	RNA PCR Primer, Index 3 (95% over 23bp)
TATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCT	3	0.2898550724637681	No Hit
TCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTG	2	0.1932367149758454	RNA PCR Primer, Index 39 (96% over 30bp)
ACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGC	2	0.1932367149758454	Illumina PCR Primer Index 1 (95% over 24bp)
GAACCAACCTATGTAAAAGTAAAATAAGAAAGGAAGGAATCGAACCCCCT	2	0.1932367149758454	No Hit
CAGCTGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAA	2	0.1932367149758454	No Hit
CTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGA	2	0.1932367149758454	RNA PCR Primer, Index 39 (96% over 30bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	2	0.1932367149758454	No Hit
CACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTG	2	0.1932367149758454	Illumina PCR Primer Index 1 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT	2	0.1932367149758454	No Hit
TTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTC	2	0.1932367149758454	No Hit
CATTTATCCTACTAAAAGTATTGGAGAAAGAAATTCGTACATCTAGGAGC	2	0.1932367149758454	No Hit
TCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTTCTGCTTG	2	0.1932367149758454	RNA PCR Primer, Index 26 (100% over 29bp)
GGCTTGATACCACTGCTTCCCATGACTCTGCGTTGATACCTGTCTCTTAT	2	0.1932367149758454	No Hit
CTTTACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTC	2	0.1932367149758454	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT	2	0.1932367149758454	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT	2	0.1932367149758454	No Hit
TATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCT	2	0.1932367149758454	RNA PCR Primer, Index 31 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTC	2	0.1932367149758454	No Hit
CATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCT	2	0.1932367149758454	TruSeq Adapter, Index 11 (96% over 26bp)
CTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGA	2	0.1932367149758454	RNA PCR Primer, Index 31 (96% over 29bp)
TTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTC	2	0.1932367149758454	No Hit
CTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTGA	2	0.1932367149758454	RNA PCR Primer, Index 1 (96% over 28bp)
ATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTT	2	0.1932367149758454	RNA PCR Primer, Index 38 (96% over 27bp)
CTTTACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC	2	0.1932367149758454	RNA PCR Primer, Index 23 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCT	2	0.1932367149758454	No Hit
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC	2	0.1932367149758454	No Hit
CATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCT	2	0.1932367149758454	RNA PCR Primer, Index 39 (96% over 28bp)
CATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCT	2	0.1932367149758454	RNA PCR Primer, Index 33 (96% over 27bp)
GCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCACT	2	0.1932367149758454	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary