Basic Statistics
Measure | Value |
---|---|
Filename | SRR937220_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2277799 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8319 | 0.36522098745323883 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6595 | 0.28953388775743605 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 4713 | 0.20691026732385082 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4622 | 0.20291518259512803 | No Hit |
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC | 3030 | 0.1330231508574725 | No Hit |
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA | 2700 | 0.11853548096210421 | No Hit |
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA | 2642 | 0.11598916322291826 | No Hit |
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG | 2609 | 0.11454039623338143 | No Hit |
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA | 2601 | 0.11418917999349372 | No Hit |
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA | 2476 | 0.10870142624524815 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2422 | 0.10633071662600607 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 13515 | 0.0 | 27.323427 | 1 |
TAAGGTG | 1410 | 0.0 | 25.93847 | 5 |
GTAAGGT | 1275 | 0.0 | 25.704647 | 4 |
GTACATG | 8435 | 0.0 | 25.072933 | 1 |
TACATGG | 8305 | 0.0 | 24.764013 | 2 |
AGGTAAG | 1225 | 0.0 | 23.651924 | 2 |
ATCAACG | 15980 | 0.0 | 22.886885 | 3 |
TCAACGC | 15980 | 0.0 | 22.85716 | 4 |
CAACGCA | 16020 | 0.0 | 22.800089 | 5 |
ACATGGG | 8605 | 0.0 | 22.796698 | 3 |
GGTAAGG | 1320 | 0.0 | 22.669363 | 3 |
TATCAAC | 16195 | 0.0 | 22.6417 | 2 |
AACGCAG | 16385 | 0.0 | 22.321173 | 6 |
GAGTACT | 8665 | 0.0 | 21.43431 | 12-13 |
GGTATCA | 9745 | 0.0 | 21.312275 | 1 |
AGAGTAC | 12750 | 0.0 | 21.142534 | 10-11 |
AGTACTT | 8980 | 0.0 | 20.920473 | 12-13 |
GTACTTT | 8830 | 0.0 | 20.46759 | 14-15 |
AAGGTAA | 1415 | 0.0 | 20.152319 | 1 |
ACGCAGA | 18190 | 0.0 | 19.89865 | 7 |