SRR937183_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937183_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	279493
Sequences flagged as poor quality	0
Sequence length	101
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5223	1.868740898698715	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4244	1.5184637897907998	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3018	1.0798123745496309	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1752	0.6268493307524696	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	899	0.3216538517959305	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	800	0.2862325711198491	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	522	0.18676675265570158	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	445	0.1592168676854161	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	381	0.13631826199582817	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	371	0.13274035485683003	No Hit
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA	282	0.10089698131974684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1970	0.0	53.05938	1
TCGAGAA	40	5.37904E-4	47.503754	9
ATCGAGA	40	5.37904E-4	47.503754	8
GATCGAG	45	9.608808E-4	42.225563	7
GTATCAA	3415	0.0	40.068905	1
TTCGATA	25	0.001615898	37.99621	16-17
ACAGTAC	105	1.8936989E-6	31.669172	8
AGATCGA	60	0.0039478103	31.663504	6
CGATAAG	30	0.0039511616	31.663504	18-19
GAGATCG	60	0.0039478103	31.663504	5
GTTATTC	80	4.48766E-4	29.684536	3
TATCAAC	4625	0.0	29.575426	2
GTATAGA	65	0.005829245	29.238316	1
ATCAACG	4675	0.0	29.157516	3
TCAACGC	4775	0.0	28.54689	4
CAACGCA	4815	0.0	28.408377	5
AACGCAG	4915	0.0	27.830387	6
GCACCGC	35	0.008377391	27.149864	88-89
CCGTATC	35	0.008388369	27.142576	92-93
TAAGTCG	35	0.008392031	27.140146	22-23