Basic Statistics
Measure | Value |
---|---|
Filename | SRR937180_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 429573 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8025 | 1.8681341704436731 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5895 | 1.372292951372642 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4321 | 1.0058825857304812 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1448 | 0.3370789132464098 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1204 | 0.280278322892733 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1083 | 0.2521108170206228 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 666 | 0.15503767694897028 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 641 | 0.14921794433076566 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 628 | 0.14619168336929927 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 552 | 0.12849969620995733 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 547 | 0.1273357496863164 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2505 | 0.0 | 53.48626 | 1 |
GTATCAA | 4960 | 0.0 | 46.458042 | 1 |
TATCAAC | 6630 | 0.0 | 34.536926 | 2 |
ATCAACG | 6650 | 0.0 | 34.433056 | 3 |
TCAACGC | 6760 | 0.0 | 33.876705 | 4 |
CAACGCA | 6845 | 0.0 | 33.24392 | 5 |
AACGCAG | 6915 | 0.0 | 32.976093 | 6 |
CGCAGAG | 7695 | 0.0 | 29.50657 | 8 |
ACGCAGA | 7685 | 0.0 | 29.483158 | 7 |
GAGCGCA | 65 | 0.0058396524 | 29.231161 | 9 |
CCTATAC | 115 | 3.8532253E-6 | 28.916807 | 3 |
GTACATG | 4155 | 0.0 | 28.587082 | 1 |
TACATGG | 4080 | 0.0 | 28.410559 | 2 |
GCAGAGT | 7945 | 0.0 | 27.920454 | 9 |
CTATACT | 120 | 5.3610456E-6 | 27.715174 | 4 |
ACATGGG | 4210 | 0.0 | 26.630545 | 3 |
CATGGGA | 3050 | 0.0 | 26.481947 | 4 |
ATGGGAG | 925 | 0.0 | 26.192598 | 5 |
ATTGGAC | 130 | 9.991856E-6 | 25.580252 | 3 |
AGTACTT | 5245 | 0.0 | 25.445421 | 12-13 |