SRR937171_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937171_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	220500
Sequences flagged as poor quality	0
Sequence length	101
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2902	1.3160997732426305	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2474	1.1219954648526078	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1879	0.8521541950113379	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1092	0.4952380952380952	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	541	0.24535147392290246	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	439	0.19909297052154196	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	336	0.1523809523809524	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	248	0.11247165532879819	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCACCG	20	0.0020733592	71.2369	5
GGTATCA	970	0.0	63.676975	1
GTATCAA	1860	0.0	44.447475	1
ACCGTCT	55	0.002571718	34.55478	8
TATCAAC	2570	0.0	32.338413	2
ATCAACG	2635	0.0	31.720924	3
GTCTAAG	75	3.0655842E-4	31.675215	1
AGGTGTC	60	0.0039388807	31.675213	7
CATATAG	60	0.003947641	31.660849	3
TAGGACC	90	2.4072162E-5	31.660847	4
TCAACGC	2670	0.0	31.305105	4
CAACGCA	2700	0.0	30.957272	5
AACGCAG	2765	0.0	30.401283	6
GTGGTAT	385	0.0	29.61838	1
GAGTTAC	65	0.005826276	29.238657	1
TGGTATC	390	0.0	29.225395	2
TCTATAG	85	6.3975167E-4	27.936039	3
ACGCAGA	3095	0.0	26.865082	7
ATAGGAT	160	6.204937E-8	26.713837	6
CGCAGAG	3080	0.0	26.687393	8