Basic Statistics
Measure | Value |
---|---|
Filename | SRR937123_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 753847 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6145 | 0.815152146257795 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4244 | 0.5629789599215755 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2860 | 0.3793873292591202 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 2043 | 0.2710098998868471 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 1489 | 0.19752018645693356 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 1247 | 0.16541818167346956 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 994 | 0.13185699485439353 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 971 | 0.12880597787084117 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 828 | 0.10983661140788516 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 7960 | 0.0 | 27.760902 | 1 |
GTACATG | 4800 | 0.0 | 24.65198 | 1 |
TATCAAC | 9305 | 0.0 | 23.800829 | 2 |
CAACGCA | 9295 | 0.0 | 23.76899 | 5 |
TCAACGC | 9355 | 0.0 | 23.670475 | 4 |
TACATGG | 4985 | 0.0 | 23.643353 | 2 |
GAGTACT | 3985 | 0.0 | 23.607176 | 12-13 |
ATCAACG | 9410 | 0.0 | 23.582623 | 3 |
AACGCAG | 9420 | 0.0 | 23.554459 | 6 |
ACATGGG | 4885 | 0.0 | 23.054125 | 3 |
GGTATCA | 5660 | 0.0 | 22.50153 | 1 |
GTACTTT | 4280 | 0.0 | 21.980776 | 14-15 |
AGTACTT | 4085 | 0.0 | 21.691715 | 12-13 |
CTACGAG | 110 | 0.00286988 | 21.599424 | 3 |
ACGCAGA | 10325 | 0.0 | 21.21378 | 7 |
CGCAGAG | 10320 | 0.0 | 21.085938 | 8 |
AGAGTAC | 7050 | 0.0 | 20.82321 | 10-11 |
TATAGGT | 160 | 4.9712307E-5 | 20.789448 | 3 |
GTACTAT | 115 | 0.0037121791 | 20.661692 | 1 |
CATGGGA | 3290 | 0.0 | 20.65404 | 4 |