SRR937118_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937118_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	156830
Sequences flagged as poor quality	0
Sequence length	101
%GC	35

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2527	1.6112988586367405	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2244	1.4308486896639672	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1805	1.1509277561691003	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1553	0.9902442134795639	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1109	0.7071351144551425	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	413	0.2633424727411847	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	413	0.2633424727411847	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	407	0.25951667410571955	No Hit
GTATTGGAATTAGTGAAATTGGAGTTCCTTGTGGAAGGAAGTGGGCAAGT	279	0.17789963654912963	No Hit
GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC	278	0.17726200344321877	No Hit
CATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCA	265	0.1689727730663776	No Hit
TACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACA	265	0.1689727730663776	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	240	0.15303194541860615	No Hit
CTATTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATG	231	0.1472932474654084	No Hit
CTCCTAGATCATGTGTTGGTACGAGGCTAGAATGATAGAACGCTCAGAAG	229	0.1460179812535867	No Hit
TTCCAATACTTATTATTATTGAAACAATTAGCCTATTTATTCAACCAATG	226	0.1441050819358541	No Hit
GAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTG	202	0.12880188739399348	No Hit
GTATAGGAAAAGTCAGACTACGTCTACAAAATGTCAGTATCATGCTGCGG	194	0.12370082254670661	No Hit
TACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACTGCAAATTCTA	189	0.12051265701715232	No Hit
GTTTAAAATTGAACTTAAATTCATTTTTTGGGTAACCAGCTATCACCAAG	187	0.11923739080533062	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	185	0.1179621245935089	No Hit
CAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGTC	182	0.11604922527577632	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACT	180	0.1147739590639546	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	178	0.11349869285213288	No Hit
GTGTTGGAAAGAATGGAGACGGTTGTTGATTAGGCGTTTTGAGGATGGGA	177	0.11286105974622203	No Hit
GTGTAAATGTATGTGGTAAAAGGCCTAGGAGATTTGTTGATCCAATAAAT	176	0.11222342664031115	No Hit
GAATTATACCATATCGTAGTCCTTTTTGTACAATAGGAGTGTGGTGGCCT	171	0.10903526111075688	No Hit
ATCCTATTCCCATCCTCAAAACGCCTAATCAACAACCGTCTCCATTCTTT	170	0.10839762800484601	No Hit
AATCAAGCCCTACTAATTACCATTATACTAGGACTTTACTTCACCATCCT	167	0.10648472868711344	No Hit
TTCTAGGACAATGGGCATAAAGCTATGGTTAGATCCACAAATTTCAGAGC	165	0.10520946247529171	No Hit
GGGTTAAGTGGTGAAATTCCTGTTGGAGGTCAGCAGCCTCCTAGATCATG	164	0.10457182936938086	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	163	0.10393419626347	No Hit
CCATGTAATTATTGGATCAACATTCCTTATTGTTTGCCTACTACGACAAC	162	0.10329656315755914	No Hit
GCTAATGCCATTGGTTGAATAAATAGGCTAATTGTTTCAATAATAATAAG	158	0.1007460307339157	No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT	158	0.1007460307339157	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGGT	30	1.2922048E-4	63.38802	1
GTGGTAC	35	2.7817968E-4	54.280613	6
TGGTACT	55	4.946385E-5	43.177757	7
GGTACTC	45	9.604066E-4	42.218254	8
TATGGTG	45	9.604066E-4	42.218254	2
ATGGTGG	55	0.0025740522	34.542206	3
TGGTGGT	55	0.0025740522	34.542206	4
ACCCTTG	100	1.2906767E-6	33.246876	7
ACGCAGC	60	0.003942458	31.66369	8
GGTATCA	1100	0.0	30.253374	1
CATGTAG	95	3.4514364E-5	30.025906	1
GGTGGTA	65	0.005831573	29.22802	5
CCCTTGG	115	3.8394573E-6	28.910326	8
CCTTGGC	115	3.8394573E-6	28.910326	9
GTATCAA	1565	0.0	28.25121	1
AATTTGG	35	0.008386275	27.140306	88-89
GAGACCC	70	0.008373712	27.140306	7
TCTCAGG	70	0.008373712	27.140306	2
GGATGAC	95	0.0012225047	24.99765	8
CACCTAC	175	1.4704892E-7	24.426275	7

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content