Basic Statistics
Measure | Value |
---|---|
Filename | SRR936988_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 679198 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6444 | 0.9487660446585531 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4809 | 0.7080409541841995 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3427 | 0.5045656789330946 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 1272 | 0.18727970341490993 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 1234 | 0.18168486950786072 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1073 | 0.15798044163852074 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 843 | 0.12411697325374928 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 830 | 0.12220295112765349 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 830 | 0.12220295112765349 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 723 | 0.10644907670517287 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGGCCCG | 175 | 1.5097612E-10 | 29.86117 | 8 |
GTGTAGG | 285 | 0.0 | 28.337154 | 1 |
GTATCAA | 8235 | 0.0 | 28.209635 | 1 |
TACGCGA | 35 | 0.008392604 | 27.14252 | 80-81 |
GGCCCGC | 195 | 5.329639E-10 | 26.798485 | 9 |
TGTAGGA | 425 | 0.0 | 24.58793 | 2 |
GGTATCA | 5725 | 0.0 | 24.562263 | 1 |
GACGAAT | 110 | 2.1700544E-9 | 23.749704 | 70-71 |
AGTACTT | 5150 | 0.0 | 23.705336 | 12-13 |
TATCAAC | 9980 | 0.0 | 23.226166 | 2 |
GAGTACT | 4995 | 0.0 | 23.204624 | 12-13 |
ATCAACG | 10025 | 0.0 | 23.072828 | 3 |
TCAACGC | 10060 | 0.0 | 23.039768 | 4 |
CAACGCA | 10205 | 0.0 | 22.712404 | 5 |
AACGCAG | 10350 | 0.0 | 22.443403 | 6 |
GTACATG | 4785 | 0.0 | 22.437717 | 1 |
GTATAGA | 170 | 3.1421587E-6 | 22.355957 | 1 |
TAGACAG | 320 | 0.0 | 22.26371 | 5 |
CGGTTCA | 150 | 7.2759576E-12 | 22.169655 | 34-35 |
GTAGGAG | 475 | 0.0 | 21.998106 | 3 |