Basic Statistics
Measure | Value |
---|---|
Filename | SRR936987_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2121766 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6229 | 0.29357620020303843 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5139 | 0.2422038999588079 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 3458 | 0.16297744426105423 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3154 | 0.14864975685348902 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 12080 | 0.0 | 26.941626 | 1 |
GGTATCA | 8850 | 0.0 | 26.305891 | 1 |
TCAACGC | 14110 | 0.0 | 22.890709 | 4 |
ATCAACG | 14205 | 0.0 | 22.772131 | 3 |
TATCAAC | 14400 | 0.0 | 22.530794 | 2 |
CAACGCA | 14395 | 0.0 | 22.470503 | 5 |
AACGCAG | 14785 | 0.0 | 21.877258 | 6 |
GTACATG | 8495 | 0.0 | 21.64451 | 1 |
GAGTACT | 7330 | 0.0 | 21.57781 | 12-13 |
TACATGG | 8500 | 0.0 | 20.789415 | 2 |
GTACTTT | 7590 | 0.0 | 20.651157 | 14-15 |
AGAGTAC | 11775 | 0.0 | 20.632498 | 10-11 |
ACGCAGA | 16305 | 0.0 | 19.779535 | 7 |
ACATGGG | 8495 | 0.0 | 19.682358 | 3 |
CGCAGAG | 16365 | 0.0 | 19.532875 | 8 |
AGTACTT | 7715 | 0.0 | 19.515982 | 12-13 |
GCAGAGT | 17325 | 0.0 | 18.12155 | 9 |
ACTTTTT | 9325 | 0.0 | 17.012768 | 16-17 |
TACTTTT | 8805 | 0.0 | 16.749601 | 14-15 |
GTGTACG | 300 | 1.4636789E-6 | 15.83722 | 1 |