Basic Statistics
Measure | Value |
---|---|
Filename | SRR936911_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 447536 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1968 | 0.4397411604876479 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1679 | 0.37516534982660615 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1062 | 0.23729934575095635 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 483 | 0.10792427871724286 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGCGC | 60 | 8.288145E-5 | 39.578865 | 8 |
GGTATCA | 1215 | 0.0 | 37.53082 | 1 |
GTATCAA | 1955 | 0.0 | 33.52937 | 1 |
GCGCGCC | 65 | 0.0058435323 | 29.22747 | 9 |
CGCGCCA | 50 | 4.9557144E-5 | 28.49678 | 10-11 |
TATCAAC | 2360 | 0.0 | 27.571041 | 2 |
TCAACGC | 2360 | 0.0 | 27.571041 | 4 |
ATCAACG | 2385 | 0.0 | 27.282034 | 3 |
CAACGCA | 2460 | 0.0 | 26.450266 | 5 |
AACGCAG | 2490 | 0.0 | 26.131588 | 6 |
GGGCGCG | 95 | 0.0012261908 | 24.997177 | 7 |
ATACCCT | 140 | 1.777885E-5 | 23.747318 | 6 |
CGCAGAG | 2785 | 0.0 | 23.36361 | 8 |
ACGCAGA | 2780 | 0.0 | 23.234787 | 7 |
GTCTATA | 145 | 2.3302458E-5 | 22.931007 | 1 |
TACATGG | 1315 | 0.0 | 22.754086 | 2 |
GTACATG | 1305 | 0.0 | 22.567022 | 1 |
GAGTACT | 1715 | 0.0 | 22.154932 | 12-13 |
GTACTAC | 130 | 2.937647E-4 | 21.923052 | 1 |
ACATGGG | 1285 | 0.0 | 21.806877 | 3 |