Basic Statistics
Measure | Value |
---|---|
Filename | SRR936886_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1308944 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7105 | 0.542803970223325 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 6304 | 0.4816096028554316 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5124 | 0.391460597244802 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 3831 | 0.29267867838501876 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3360 | 0.2566954736031488 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 2894 | 0.22109425613318828 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 2342 | 0.17892285689838525 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 2126 | 0.1624210050238971 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 1743 | 0.13316077693163345 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 1706 | 0.13033407082350354 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 1651 | 0.1261322103924996 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 1391 | 0.10626887017320832 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 7430 | 0.0 | 24.811062 | 1 |
TAGGACG | 135 | 1.3395129E-5 | 24.637688 | 4 |
TACATGG | 7480 | 0.0 | 23.883904 | 2 |
ACATGGG | 7440 | 0.0 | 22.416607 | 3 |
GAGTACT | 5660 | 0.0 | 21.786201 | 12-13 |
AGTACTT | 5995 | 0.0 | 21.55958 | 12-13 |
CATGGGG | 2485 | 0.0 | 21.415455 | 4 |
GTACTTT | 6065 | 0.0 | 20.096348 | 14-15 |
TAAGGTG | 410 | 0.0 | 19.703072 | 5 |
AGAGTAC | 11040 | 0.0 | 19.585192 | 10-11 |
GTATCAA | 15750 | 0.0 | 19.487423 | 1 |
GTATTAC | 245 | 1.7518505E-7 | 19.392614 | 1 |
CATGGGA | 5265 | 0.0 | 17.778845 | 4 |
TACTTTT | 7180 | 0.0 | 17.736624 | 14-15 |
CAACGCA | 18000 | 0.0 | 17.080503 | 5 |
TCAACGC | 18030 | 0.0 | 17.050781 | 4 |
TATCAAC | 17990 | 0.0 | 17.035215 | 2 |
ATGGGAG | 2375 | 0.0 | 17.006863 | 5 |
ACTTTTT | 7335 | 0.0 | 16.939436 | 16-17 |
ATCAACG | 18140 | 0.0 | 16.92119 | 3 |