Basic Statistics
Measure | Value |
---|---|
Filename | SRR936627_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2426816 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6603 | 0.2720849046652074 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5893 | 0.24282846330335714 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 5143 | 0.21192377172393784 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3338 | 0.13754648065613545 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 8835 | 0.0 | 23.497452 | 1 |
GTATCAA | 14395 | 0.0 | 22.30904 | 1 |
ACATGGG | 8975 | 0.0 | 22.280806 | 3 |
TACATGG | 9105 | 0.0 | 22.277067 | 2 |
GGTATCA | 11150 | 0.0 | 21.64386 | 1 |
GAGTACT | 8115 | 0.0 | 21.33542 | 12-13 |
GTACTTT | 8445 | 0.0 | 20.530256 | 14-15 |
CATGGGG | 5570 | 0.0 | 19.35691 | 4 |
AGTACTT | 8580 | 0.0 | 19.182629 | 12-13 |
CAACGCA | 16740 | 0.0 | 19.095232 | 5 |
ATCAACG | 16725 | 0.0 | 19.084745 | 3 |
TCAACGC | 16750 | 0.0 | 19.055475 | 4 |
TACCTGG | 2255 | 0.0 | 18.958591 | 2 |
AGAGTAC | 13020 | 0.0 | 18.879158 | 10-11 |
AACGCAG | 17080 | 0.0 | 18.76996 | 6 |
GTACCTG | 2305 | 0.0 | 18.754969 | 1 |
TATCAAC | 17055 | 0.0 | 18.549517 | 2 |
TATACCG | 155 | 9.632933E-4 | 18.385899 | 5 |
ACTTTTT | 9945 | 0.0 | 17.433147 | 16-17 |
GTAAGGT | 765 | 0.0 | 17.38449 | 4 |