Basic Statistics
Measure | Value |
---|---|
Filename | SRR936626_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2502387 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6815 | 0.272339969796838 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6101 | 0.24380721287314872 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 5210 | 0.20820120948518353 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3624 | 0.14482172421771694 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 8235 | 0.0 | 24.775034 | 1 |
GTATCAA | 14685 | 0.0 | 23.079144 | 1 |
TACATGG | 8820 | 0.0 | 22.298428 | 2 |
ACATGGG | 8670 | 0.0 | 21.58577 | 3 |
GAGTACT | 8620 | 0.0 | 21.017138 | 12-13 |
GTGTAGC | 1270 | 0.0 | 20.789684 | 1 |
GGTATCA | 11270 | 0.0 | 20.488497 | 1 |
GTACTTT | 8955 | 0.0 | 20.2309 | 14-15 |
AGTACTT | 9115 | 0.0 | 19.875778 | 12-13 |
AGAGTAC | 13155 | 0.0 | 19.854856 | 10-11 |
TCAACGC | 17175 | 0.0 | 19.440805 | 4 |
ATCAACG | 17215 | 0.0 | 19.397186 | 3 |
TATCAAC | 17395 | 0.0 | 19.308008 | 2 |
CAACGCA | 17385 | 0.0 | 19.231756 | 5 |
AACGCAG | 17700 | 0.0 | 19.023655 | 6 |
GGACCGT | 355 | 7.8216544E-11 | 18.729261 | 6 |
CATGGGG | 5415 | 0.0 | 17.893175 | 4 |
TACCTGG | 1915 | 0.0 | 17.86102 | 2 |
GTACCTG | 2090 | 0.0 | 17.686152 | 1 |
ACTTTTT | 10600 | 0.0 | 17.584448 | 16-17 |