Basic Statistics
Measure | Value |
---|---|
Filename | SRR936611_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2186727 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 12544 | 0.573642708943549 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 8322 | 0.38056876784344823 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8257 | 0.37759628888288294 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6610 | 0.30227824506671386 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 5856 | 0.2677974891241568 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 5103 | 0.23336246362714685 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 3965 | 0.18132121659448114 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3732 | 0.17066602278199336 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 3632 | 0.16609297822727756 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 3308 | 0.1512763138699984 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 2997 | 0.1370541453048323 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 2662 | 0.12173444604653438 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 2583 | 0.11812174084830891 | No Hit |
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA | 2474 | 0.11313712228366869 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 10460 | 0.0 | 25.389048 | 1 |
TACATGG | 10705 | 0.0 | 24.142843 | 2 |
GTAAGGT | 895 | 0.0 | 23.887772 | 4 |
GAGTACT | 8675 | 0.0 | 22.809814 | 12-13 |
ACATGGG | 10900 | 0.0 | 22.534618 | 3 |
TAAGGTG | 970 | 0.0 | 22.531607 | 5 |
TACCGTC | 195 | 4.2126703E-7 | 21.929756 | 7 |
GTACTTT | 9160 | 0.0 | 21.319756 | 14-15 |
AGTACTT | 8935 | 0.0 | 20.657259 | 12-13 |
GGTAAGG | 975 | 0.0 | 20.4659 | 3 |
TACGGGT | 140 | 4.8466935E-4 | 20.36148 | 4 |
TATCACG | 165 | 6.3168016E-5 | 20.15535 | 2 |
AGGTAAG | 970 | 0.0 | 20.081139 | 2 |
AGAGTAC | 15140 | 0.0 | 19.691284 | 10-11 |
CATGGGG | 4805 | 0.0 | 19.67641 | 4 |
GTATCGA | 145 | 6.141544E-4 | 19.658463 | 1 |
CATGGGA | 5915 | 0.0 | 18.795214 | 4 |
TGCACCG | 775 | 0.0 | 18.391857 | 5 |
TACTTTT | 10125 | 0.0 | 18.208431 | 14-15 |
ACTTTTT | 10935 | 0.0 | 18.121033 | 16-17 |