Basic Statistics
Measure | Value |
---|---|
Filename | SRR936585_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2506174 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 12002 | 0.4788973151904058 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 7958 | 0.31753581355484495 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7399 | 0.2952308977748552 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6316 | 0.25201761729233485 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 5240 | 0.2090836470253063 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 5012 | 0.1999861142921441 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 3562 | 0.1421289982259811 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3367 | 0.1343482136515661 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 3307 | 0.13195412609020762 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 2843 | 0.11343984894903547 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 2740 | 0.10932999863537007 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 10995 | 0.0 | 27.015759 | 1 |
TACATGG | 11100 | 0.0 | 25.947212 | 2 |
GTACCTG | 2110 | 0.0 | 25.001892 | 1 |
ACATGGG | 11155 | 0.0 | 24.583702 | 3 |
TACCTGG | 2210 | 0.0 | 22.580734 | 2 |
GTGTAGC | 1365 | 0.0 | 21.23878 | 1 |
GAGTACT | 7695 | 0.0 | 21.032387 | 12-13 |
CATGGGG | 5250 | 0.0 | 20.731682 | 4 |
TATCACG | 145 | 6.1252655E-4 | 19.666374 | 2 |
CATGGGA | 6095 | 0.0 | 19.651024 | 4 |
AGAGTAC | 13720 | 0.0 | 19.623184 | 10-11 |
GTACTTT | 8270 | 0.0 | 19.397808 | 14-15 |
AGTACTT | 8085 | 0.0 | 19.018415 | 12-13 |
GTATAGA | 875 | 0.0 | 18.467293 | 1 |
GAGTACA | 8780 | 0.0 | 17.538115 | 1 |
GTATAGG | 745 | 0.0 | 17.224234 | 1 |
ACTTTTT | 10220 | 0.0 | 16.648094 | 16-17 |
ATGGGAG | 3005 | 0.0 | 16.606133 | 5 |
TATACCG | 175 | 0.0021630297 | 16.294346 | 5 |
GTATCAA | 24085 | 0.0 | 16.180784 | 1 |