SRR936544_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936544_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380568
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	921	0.2420066847449076	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	794	0.20863551323285195	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	632	0.16606756217022978	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	499	0.13111979987807698	No Hit
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT	464	0.12192302032751046	No Hit
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC	442	0.11614218746715436	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	427	0.11220071051691155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	1620	0.0	32.87048	1
GTACATG	1260	0.0	30.941856	1
ACCGAGC	65	0.0058086403	29.262188	8
TGTACCG	65	0.0058123777	29.258339	5
ACATGGG	1195	0.0	29.044107	3
TACATGG	1300	0.0	28.892612	2
ATCAACG	1855	0.0	28.449991	3
GGTATCA	1045	0.0	28.2084	1
GCGACAG	135	4.1779822E-7	28.174698	7
TCAACGC	1890	0.0	27.92314	4
TATCAAC	1925	0.0	27.66243	2
CAACGCA	1915	0.0	27.558605	5
AACGCAG	1985	0.0	26.586765	6
AGGCGAC	150	1.0483363E-6	25.357227	5
AAGGCGA	150	1.0483363E-6	25.357227	4
ACGCAGA	2125	0.0	24.611427	7
CGCAGAG	2140	0.0	24.442131	8
CGACAGC	180	1.9238178E-7	23.77553	8
GTATAGA	100	0.0016425784	23.7724	1
GATACTC	120	1.6970004E-4	23.772398	5