SRR936543_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936543_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	220691
Sequences flagged as poor quality	0
Sequence length	101
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	831	0.376544580431463	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	772	0.3498103683430679	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	450	0.2039050074538608	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	376	0.17037396178367037	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	277	0.125514860143821	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	252	0.11418680417416206	No Hit
CCTCAACACCTCAACCCCCTCCCAGGGAGACCAAAGCCTTCATACATCAA	227	0.10285874820450314	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	226	0.10240562596571677	No Hit
GTCCCAGGGTGTGCTTGTCAAAGAGATATTCTGCCATGCCAGCTTCAGGG	225	0.1019525037269304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAG	20	0.0020723005	71.246086	8
GGCTCGA	25	0.0050170044	56.99687	6
GGGCGTA	45	1.5124348E-5	52.77488	9
AGCGTAG	20	5.386007E-4	47.49739	48-49
TGCGTAA	30	8.285124E-5	39.58116	60-61
AACGTTG	25	0.0016142738	38.00222	20-21
GATACAC	65	1.3251368E-4	36.536453	3
CGCGAGG	35	2.0519513E-4	33.92671	48-49
ACGATCG	35	2.0519513E-4	33.92671	82-83
TTGCGTA	35	2.0519513E-4	33.92671	60-61
GCTTATA	105	1.8865976E-6	31.679287	1
TAGGGGG	60	0.0039451555	31.66493	5
TTATAGG	90	2.405103E-5	31.664928	3
TAGTGAT	125	2.1416054E-7	30.398333	7
GCGCGAG	40	4.4906477E-4	29.685871	48-49
CTTGCGT	40	4.4906477E-4	29.685871	58-59
AGCGCGA	40	4.4906477E-4	29.685871	46-47
AGGGCGT	80	4.4834506E-4	29.685871	8
GCGTAAG	40	4.4906477E-4	29.685871	62-63
CGCGAAT	50	4.9405004E-5	28.504894	28-29