Basic Statistics
Measure | Value |
---|---|
Filename | SRR936485_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1722245 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 8960 | 0.5202511837746662 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7830 | 0.45463914832094154 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6232 | 0.3618532787147009 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 5607 | 0.3255634360964903 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 3774 | 0.2191325856658025 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3708 | 0.21530037828531948 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 3488 | 0.20252635368370933 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 2559 | 0.1485851316160012 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 2230 | 0.1294821584617752 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 2073 | 0.12036614999608068 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 1963 | 0.11397913769527564 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 1736 | 0.10079866685634158 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1745 | 0.0 | 28.87079 | 2 |
GTACATG | 9695 | 0.0 | 27.941519 | 1 |
TACATGG | 9955 | 0.0 | 27.070112 | 2 |
GTACCTG | 1850 | 0.0 | 26.973701 | 1 |
ACATGGG | 10070 | 0.0 | 25.769821 | 3 |
TATCACG | 100 | 0.0016483446 | 23.763927 | 2 |
GAGTACT | 7030 | 0.0 | 22.649069 | 12-13 |
CATGGGA | 6465 | 0.0 | 22.644789 | 4 |
GTACACG | 290 | 1.05501385E-10 | 21.304354 | 1 |
GTACTTT | 7595 | 0.0 | 20.619991 | 14-15 |
AGTACTT | 7200 | 0.0 | 20.034895 | 12-13 |
CATGGGG | 3775 | 0.0 | 19.642365 | 4 |
GTATAGG | 465 | 0.0 | 19.418856 | 1 |
ATAACGC | 175 | 9.8957986E-5 | 19.011143 | 3 |
ATGGGAG | 2650 | 0.0 | 18.654068 | 5 |
ATGGGAT | 2530 | 0.0 | 18.411604 | 5 |
TAGTACC | 465 | 0.0 | 18.399485 | 4 |
AGAGTAC | 13400 | 0.0 | 18.300442 | 10-11 |
ACCTGGG | 2725 | 0.0 | 18.139072 | 3 |
ACTTTTT | 9045 | 0.0 | 17.839108 | 16-17 |