Basic Statistics
Measure | Value |
---|---|
Filename | SRR936395_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1518563 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7210 | 0.47479097014743543 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6509 | 0.42862890772394696 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4295 | 0.282833178472016 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 3094 | 0.2037452512671519 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1891 | 0.12452562060316233 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1720 | 0.0 | 36.456318 | 2 |
GTACCTG | 1900 | 0.0 | 33.25696 | 1 |
GTACACG | 295 | 0.0 | 27.378613 | 1 |
GGTATCA | 8840 | 0.0 | 26.388443 | 1 |
GTATCAA | 12100 | 0.0 | 25.835987 | 1 |
GTACATG | 7435 | 0.0 | 25.56016 | 1 |
TACATGG | 7620 | 0.0 | 23.564823 | 2 |
ACATGGG | 7450 | 0.0 | 22.95329 | 3 |
CATGGGG | 3165 | 0.0 | 22.21049 | 4 |
GAGTACT | 8165 | 0.0 | 22.135536 | 12-13 |
ATCAACG | 14410 | 0.0 | 21.591166 | 3 |
TATCAAC | 14400 | 0.0 | 21.57459 | 2 |
TCAACGC | 14495 | 0.0 | 21.528675 | 4 |
CAACGCA | 14690 | 0.0 | 21.274527 | 5 |
AACGCAG | 14925 | 0.0 | 20.970684 | 6 |
ACCTGGG | 2900 | 0.0 | 20.80197 | 3 |
GTACTTT | 8830 | 0.0 | 20.523285 | 14-15 |
AGTACTT | 8345 | 0.0 | 20.121237 | 12-13 |
TGCACCG | 450 | 0.0 | 20.05381 | 5 |
TACACGG | 335 | 3.45608E-11 | 19.85229 | 2 |