SRR936354_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936354_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3175139
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	5365	0.16896898057061438	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4881	0.15372555343246389	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	4607	0.14509600996995722	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	3990	0.12566378983723234	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	3740	0.11779011879479921	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3663	0.11536502811372984	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3567	0.11234153843343551	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	3312	0.10431039397015374	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	3256	0.10254669165664873	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	3820	44.832634	1
GTATCAA	6685	42.1996	1
ATCAACG	8585	32.32495	3
TCAACGC	8605	32.304947	4
CAACGCA	8845	31.374754	5
TATCAAC	8980	31.11929	2
AACGCAG	9270	30.038668	6
TACATGG	12365	28.35574	2
GTACATG	13070	27.444216	1
ACATGGG	12240	27.439367	3
ACGCAGA	11355	24.314095	7
CGCAGAG	11500	24.007526	8
TAAGGTG	1565	22.430536	5
GAGTACA	9290	21.763477	1
CATGGGA	4930	21.74622	4
GTAAGGT	1420	21.714373	4
CATGGGG	7870	21.578962	4
AGTACAT	9305	20.293518	2
AGGTAAG	1360	20.233908	2
GCAGAGT	14230	19.268381	9