Basic Statistics
Measure | Value |
---|---|
Filename | SRR936354_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3175139 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA | 5365 | 0.16896898057061438 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4881 | 0.15372555343246389 | No Hit |
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA | 4607 | 0.14509600996995722 | No Hit |
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA | 3990 | 0.12566378983723234 | No Hit |
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG | 3740 | 0.11779011879479921 | No Hit |
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA | 3663 | 0.11536502811372984 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3567 | 0.11234153843343551 | No Hit |
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA | 3312 | 0.10431039397015374 | No Hit |
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA | 3256 | 0.10254669165664873 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3820 | 0.0 | 44.832634 | 1 |
GTATCAA | 6685 | 0.0 | 42.1996 | 1 |
ATCAACG | 8585 | 0.0 | 32.32495 | 3 |
TCAACGC | 8605 | 0.0 | 32.304947 | 4 |
CAACGCA | 8845 | 0.0 | 31.374754 | 5 |
TATCAAC | 8980 | 0.0 | 31.11929 | 2 |
AACGCAG | 9270 | 0.0 | 30.038668 | 6 |
TACATGG | 12365 | 0.0 | 28.35574 | 2 |
GTACATG | 13070 | 0.0 | 27.444216 | 1 |
ACATGGG | 12240 | 0.0 | 27.439367 | 3 |
ACGCAGA | 11355 | 0.0 | 24.314095 | 7 |
CGCAGAG | 11500 | 0.0 | 24.007526 | 8 |
TAAGGTG | 1565 | 0.0 | 22.430536 | 5 |
GAGTACA | 9290 | 0.0 | 21.763477 | 1 |
CATGGGA | 4930 | 0.0 | 21.74622 | 4 |
GTAAGGT | 1420 | 0.0 | 21.714373 | 4 |
CATGGGG | 7870 | 0.0 | 21.578962 | 4 |
AGTACAT | 9305 | 0.0 | 20.293518 | 2 |
AGGTAAG | 1360 | 0.0 | 20.233908 | 2 |
GCAGAGT | 14230 | 0.0 | 19.268381 | 9 |