Basic Statistics
Measure | Value |
---|---|
Filename | SRR936295_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1741669 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3745 | 0.21502363537503397 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2573 | 0.14773185949798728 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 2467 | 0.14164574324972196 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1894 | 0.10874626579447644 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1705 | 0.0 | 30.26106 | 2 |
GTACCTG | 1745 | 0.0 | 30.120296 | 1 |
GTACATG | 6445 | 0.0 | 26.816471 | 1 |
TACATGG | 6320 | 0.0 | 26.588467 | 2 |
ACATGGG | 6500 | 0.0 | 24.39501 | 3 |
GTATCAA | 7210 | 0.0 | 23.31443 | 1 |
TACCGGG | 185 | 2.6300404E-7 | 23.027819 | 2 |
CATGGGG | 4380 | 0.0 | 21.937092 | 4 |
CCGTATC | 130 | 3.014168E-4 | 21.845022 | 9 |
CAACGCA | 8330 | 0.0 | 20.171604 | 5 |
TCAACGC | 8320 | 0.0 | 20.13896 | 4 |
ATCAACG | 8330 | 0.0 | 20.11536 | 3 |
TATCAAC | 8410 | 0.0 | 19.868301 | 2 |
AACGCAG | 8580 | 0.0 | 19.803947 | 6 |
GAGTACA | 5155 | 0.0 | 19.565126 | 1 |
AGTACAT | 4695 | 0.0 | 19.357428 | 2 |
GGTATCA | 5585 | 0.0 | 19.24573 | 1 |
ACCTGGG | 2720 | 0.0 | 18.794224 | 3 |
GTACTTT | 3975 | 0.0 | 18.101452 | 14-15 |
AGAGTAC | 6775 | 0.0 | 17.990004 | 10-11 |