SRR936267_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936267_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23109
Sequences flagged as poor quality	0
Sequence length	125
%GC	38

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	817	3.5354191007832445	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	737	3.1892336319183	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	563	2.436280237137046	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	175	0.7572807131420658	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127	0.5495694318230993	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	113	0.4889869747717339	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99	0.4284045177203687	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	89	0.38513133411225065	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	82	0.35484010558656803	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	81	0.3505127872257562	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC	79	0.3418581505041326	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	57	0.24665714656627288	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	53	0.22934787312302568	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	53	0.22934787312302568	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	46	0.199056644597343	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	44	0.1904020078757194	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	44	0.1904020078757194	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	42	0.1817473711540958	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	42	0.1817473711540958	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40	0.1730927344324722	No Hit
GTACATGGGATTGCTTCAAGTCACTCCATTTAGTTTGATGTTGGCTACTG	37	0.16011077935003679	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	37	0.16011077935003679	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	37	0.16011077935003679	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC	36	0.15578346098922496	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	34	0.14712882426760138	No Hit
GTTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32	0.13847418754597773	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	32	0.13847418754597773	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	31	0.13414686918516594	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	30	0.12981955082435415	No Hit
GTTCTAGACCAATCTTTCTCTTGTTTGGTTAGAGTCACAGCAAGCTGAAC	30	0.12981955082435415	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC	30	0.12981955082435415	No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGT	29	0.12549223246354235	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	28	0.12116491410273054	No Hit
GTATAAGAACAGAAGCAACAGAAACCAAGGTTACTTGGCATTATCAGAAC	27	0.11683759574191872	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG	26	0.11251027738110693	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT	25	0.10818295902029512	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT	25	0.10818295902029512	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	24	0.10385564065948333	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTATCA	15	2.6478045E-4	119.22559	1
TTATCAA	15	2.6708128E-4	118.96753	2
GTGCTAA	25	1.674108E-5	95.38048	1
TCTGCGA	25	1.692296E-5	95.174034	8
CTGCGAT	25	1.692296E-5	95.174034	9
TAATCTG	25	1.692296E-5	95.174034	5
ATGGGTA	20	8.3850545E-4	89.22565	5
GGTATCA	275	0.0	82.37405	1
GCTAATC	30	4.181928E-5	79.31168	3
CTAATCT	30	4.181928E-5	79.31168	4
ATCTGCG	30	4.181928E-5	79.31168	7
CATGGGT	35	8.976455E-5	67.981445	4
AATCTGC	35	8.976455E-5	67.981445	6
TGCTAAT	35	8.976455E-5	67.981445	2
GATCAGA	15	0.0041793752	59.612797	108-109
CATAGGT	20	1.7471162E-4	59.548214	106-107
CCATAGG	25	7.304523E-6	59.548214	106-107
AGATCAG	15	0.0041973833	59.54821	106-107
TGTTTCG	20	1.7565154E-4	59.483765	78-79
AACCGGC	20	1.7565154E-4	59.483765	46-47

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content