SRR936253_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936253_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3413606
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	7732	0.2265053436161057	No Hit
CCTCAGACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGG	5281	0.15470443864933445	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	4749	0.13911974609840735	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	4599	0.1347255658678828	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	4553	0.1333780172638553	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	4447	0.13027279656761795	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	4005	0.11732461215500559	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3852	0.11284254831987053	No Hit
CTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCCCTGGCTGCCTCAACA	3439	0.10074390541849293	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	3600	57.841026	1
GTACATG	16985	50.964516	1
TACATGG	16955	50.282726	2
ACATGGG	17180	48.931602	3
GTATCAA	4905	41.845673	2
CATGGGG	8680	41.398792	4
TCAACGC	5315	38.841557	5
CAACGCA	5305	38.802628	6
CATGGGA	8305	38.61176	4
ATCAACG	5445	37.695686	4
AACGCAG	5695	36.354317	7
TATCAAC	6460	32.325485	3
GAGTACA	9590	30.770428	1
ATGGGGG	4555	29.91008	5
ACGCAGA	6820	29.39831	8
CGCAGAG	6970	27.655981	9
ATGGGAT	3750	26.177197	5
CATGGGT	3090	25.992363	4
ATGGGAG	4125	25.81663	5
CATGGGC	4030	24.801313	4