SRR936242_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936242_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	887381
Sequences flagged as poor quality	0
Sequence length	125
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7183	0.8094606488081219	No Hit
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3578	0.4032089936566142	No Hit
GAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2009	0.22639655345336446	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	1702	0.19180036534476172	No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1619	0.18244699852712645	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACT	1146	0.1291440767832532	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1145	0.12903138561677566	No Hit
GAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1021	0.11505768097356153	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	962	0.10840890215138707	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	930	0.10480278482410599	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTACATG	9100	54.132896	1
TACATGG	9355	50.240692	2
GAACAAA	1765	46.853546	1
ACATGGG	9615	45.78833	3
CATGGGG	2405	43.290768	4
ATGGGAT	2340	42.967808	5
CATGGGA	6910	42.015945	4
GTCGGGA	560	41.433243	2
GGTATCA	2370	41.168766	1
ATGGGAG	2095	39.75725	5
CGCAGAA	205	37.727833	2
TCGGGAG	605	37.368057	3
CGGGAGT	630	35.8852	4
GAGAACA	1600	34.95266	1
ATGGGTA	430	33.20589	5
GTACAAG	910	32.68895	1
TACCTGG	405	32.31767	2
GTATCAA	3030	32.20131	2
GTATAGG	425	32.196693	1
ATGGGGG	1430	32.035168	5