SRR936237_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936237_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	193027
Sequences flagged as poor quality	0
Sequence length	125
%GC	34

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6265	3.2456599335844207	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6219	3.221829070544535	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5550	2.875245431986199	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1961	1.0159200526351235	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1571	0.8138757790360934	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1508	0.7812378579162501	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1093	0.5662420283172821	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	803	0.4160039787180032	No Hit
CTATTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATG	685	0.35487263439829664	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACT	678	0.35124619871831403	No Hit
GTACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAG	572	0.2963316012785776	No Hit
CTATAAGGCTATGATGAGCTCATGTAATTGAAACACCTGATGCTAGAAGT	484	0.25074212415879643	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	452	0.23416413247887602	No Hit
GTGTAAATGTATGTGGTAAAAGGCCTAGGAGATTTGTTGATCCAATAAAT	437	0.22639319887891332	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	435	0.2253570743989183	No Hit
CATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCA	426	0.22069451423894068	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	379	0.19634558895905754	No Hit
ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC	367	0.1901288420790874	No Hit
GTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAAGTGAA	365	0.18909271759909235	No Hit
GTATTAAGTAGTGGGACTTCTAGAGGGTTAAGTGGTGAAATTCCTGTTGG	364	0.18857465535909484	No Hit
GTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTC	357	0.18494821967911224	No Hit
GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC	342	0.17717728607914954	No Hit
ATGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTAT	325	0.16837022799919182	No Hit
GTATTGGAATTAGTGAAATTGGAGTTCCTTGTGGAAGGAAGTGGGCAAGT	319	0.16526185455920675	No Hit
GAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTG	305	0.15800898319924156	No Hit
TTCCAATACTTATTATTATTGAAACAATTAGCCTATTTATTCAACCAATG	294	0.15231029855926892	No Hit
GAATTATACCATATCGTAGTCCTTTTTGTACAATAGGAGTGTGGTGGCCT	294	0.15231029855926892	No Hit
ATCTAGGAGGCTGCTGACCTCCAACAGGAATTTCACCACTTAACCCTCTA	292	0.15127417407927388	No Hit
CTCCTAGATCATGTGTTGGTACGAGGCTAGAATGATAGAACGCTCAGAAG	287	0.1486838628792863	No Hit
CGTATAGGAAAAGTCAGACTACGTCTACAAAATGTCAGTATCATGCTGCG	280	0.14505742719930373	No Hit
CTCCTATTGTACAAAAAGGACTACGATATGGTATAATTCTATTCATCGTC	274	0.14194905375931863	No Hit
GGTGAATACGTAGGCTTGAATTAATGCTACTGCAAATTCTAGAATTGTGA	268	0.13884068031933355	No Hit
ATCCTATTCCCATCCTCAAAACGCCTAATCAACAACCGTCTCCATTCTTT	268	0.13884068031933355	No Hit
GCTATGATGAGCTCATGTAATTGAAACACCTGATGCTAGAAGTACTGAAG	266	0.13780455583933854	No Hit
CAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTA	265	0.13728649359934103	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	259	0.13417812015935593	No Hit
CAATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTACCAAGGC	253	0.13106974671937086	No Hit
CCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATGACGAGAC	232	0.12019043967942308	No Hit
GGAAAAGTCAGACTACGTCTACAAAATGTCAGTATCATGCTGCGGCTTCA	228	0.11811819071943304	No Hit
GTTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	225	0.11656400399944049	No Hit
TTCCAACACTGACTAGTTAAACTTATTATCAAACAAATAATGCTAATCCA	221	0.11449175503945043	No Hit
TTCTAGAATTGTGAGTAGAAGTAAAATAATAAATGTAATGGTAGCTGTTG	220	0.11397369279945292	No Hit
GGCTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTC	212	0.10982919487947283	No Hit
CTACTATACAATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTC	212	0.10982919487947283	No Hit
GTATAATGGTAATTAGTAGGGCTTGATTTATGTGGTTTCGTTTACCTTCT	211	0.10931113263947531	No Hit
CCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTT	205	0.10620275919949022	No Hit
TGTCAGTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAA	201	0.10413051023950018	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACTC	70	1.8189894E-12	76.51883	3
GTGGTAC	80	0.0	74.41258	1
GCAGCGT	25	0.0020501337	71.43608	1
CACGCAG	25	0.002052243	71.41757	5
GCGTACT	25	0.002052243	71.41757	4
GGTATCA	1675	0.0	67.17124	1
TGGTACT	80	7.2759576E-12	66.95398	2
ACTCCCG	80	7.2759576E-12	66.93663	6
TCCCGCT	85	1.4551915E-11	62.999184	8
ACGTAAC	30	0.0042227604	59.530067	1
CAGCGTA	30	0.004227098	59.51464	2
TGGGGCG	30	0.004227098	59.51464	5
CAGACCC	30	0.004227098	59.51464	4
GGACCTT	30	0.004231439	59.49922	6
CCCGCTG	100	1.8189894E-12	59.49922	9
GGGGCGC	30	0.004231439	59.49922	6
CTCCCGC	90	2.3646862E-11	59.499218	7
CTTACTA	215	0.0	52.580708	9
ATATAGG	205	0.0	52.25676	2
AGCGTAC	35	0.007778912	51.01255	3

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content