SRR936211_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936211_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20485
Sequences flagged as poor quality	0
Sequence length	125
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	636	3.1047107639736393	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	550	2.6848913839394677	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	490	2.3919941420551623	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	136	0.6639004149377593	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115	0.5613863802782524	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	85	0.4149377593360996	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75	0.36612155235538196	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72	0.35147669026116674	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	72	0.35147669026116674	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC	59	0.28801562118623386	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57	0.2782523797900903	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	53	0.25872589699780324	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	47	0.22943617280937273	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	45	0.2196729314132292	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	42	0.20502806931901393	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	42	0.20502806931901393	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	39	0.19038320722479862	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	37	0.1806199658286551	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT	36	0.17573834513058337	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	35	0.1708567244325116	No Hit
GTACATGGGGGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTCTGTCCCA	34	0.16597510373443983	No Hit
CTATTGGACTATGGCTCCGATTCGACTCTCAGACCAAGAGCATCTTCGAG	32	0.15621186233829631	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC	32	0.15621186233829631	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	32	0.15621186233829631	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	31	0.15133024164022457	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC	30	0.1464486209421528	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	29	0.14156700024408103	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28	0.13668537954600926	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC	28	0.13668537954600926	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC	26	0.12692213814986575	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG	26	0.12692213814986575	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	26	0.12692213814986575	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC	25	0.12204051745179399	No Hit
GCGTTGGACTGCTGTGGCATAGCTGGTCCTTTGGAGCAGTTTATCTCGGA	24	0.11715889675372224	No Hit
GTCCAATAGCAAGCACTGCAATGCCAGCGAGCCAGAAGATGAAGTTAAAT	23	0.11227727605565047	No Hit
ATCCTGTGCTGCGCCATCCGCAGGAGCCGAGAAATGGTCTAGAGTCTGCC	23	0.11227727605565047	No Hit
CTCTAGACCATTTCTCGGCTCCTGCGGATGGCGCAGCACAGGATCATGCT	23	0.11227727605565047	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT	22	0.10739565535757872	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT	22	0.10739565535757872	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG	21	0.10251403465950697	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	21	0.10251403465950697	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	21	0.10251403465950697	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	335	0.0	65.716415	1
GAAATTA	15	0.0042074393	59.5	118-119
CTCCCGG	15	0.0042074393	59.5	98-99
CCCACGG	15	0.0042074393	59.5	98-99
GCACGGC	15	0.0042074393	59.5	90-91
CTTGCCC	15	0.0042074393	59.5	76-77
GATAGCT	15	0.0042074393	59.5	72-73
GTATCAA	435	0.0	50.609196	2
TATCAAC	620	0.0	37.427418	1
AACGCAG	640	0.0	37.1875	5
TCAACGC	640	0.0	37.1875	3
CAACGCA	640	0.0	37.1875	4
ATCAACG	630	0.0	36.833332	2
ACGCAGA	730	0.0	32.602737	6
CGCAGAG	735	0.0	32.38095	7
GCAGAGT	760	0.0	31.315788	8
CAGAGTA	775	0.0	30.709679	9
TGGAGCT	40	0.005302687	29.749998	28-29
TGGTATC	130	6.082108E-5	27.461538	2
GTGGTAT	135	7.8642384E-5	26.444445	1

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content