SRR936199_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936199_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48555
Sequences flagged as poor quality	0
Sequence length	125
%GC	31

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1939	3.99340953557821	No Hit
GAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1338	2.7556379363608277	No Hit
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	950	1.9565441252188238	No Hit
GAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	801	1.64967562557924	No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	473	0.9741530223457935	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	370	0.7620224487694368	No Hit
ACACAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	285	0.5869632375656472	No Hit
ACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	237	0.48810627123880135	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	147	0.30274945937596537	No Hit
CCTTTTTCCTTTCCTTTTTCCTTTCCTTTTTCCTTTCCTTTTTCCTTTCC	147	0.30274945937596537	No Hit
AAAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	107	0.22036865410359385	No Hit
GGAAAAAGGAAAGGAAAAAGGAAAGGAAAAAGGAAAGGAAAAAGGAAAGG	101	0.2080115333127381	No Hit
AAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	100	0.20595201318092884	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	89	0.18329729173102668	No Hit
GAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	87	0.1791782514674081	No Hit
ACAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	81	0.16682113067655235	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81	0.16682113067655235	No Hit
GAAAACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	80	0.16476161054474306	No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	66	0.13592832869941301	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61	0.1256307280403666	No Hit
GGAAAGGAAAAAGGAAAGGAAAAAGGAAAGGAAAAAGGAAAGGAAAAAGG	60	0.1235712079085573	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	55	0.11327360724951087	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	55	0.11327360724951087	No Hit
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	53	0.10915456698589229	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	51	0.10503552672227372	No Hit
AAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	50	0.10297600659046442	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	50	0.10297600659046442	No Hit
GAGTTAAGTTATACTGTTACACTGACAAATCATCTTGTTGTGAGGATGCA	49	0.10091648645865513	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCATTG	15	2.6866092E-4	118.99279	7
TTCACCC	20	8.434406E-4	89.2446	3
GTCCAAG	20	8.434406E-4	89.2446	1
CCATTGG	20	8.434406E-4	89.2446	8
ACATGGA	35	8.832376E-7	84.99485	3
GAACAAA	310	0.0	74.8503	1
CCCCTTG	25	0.0020454568	71.395676	9
CCCTATA	25	0.0020454568	71.395676	7
ACCAAGC	25	0.0020454568	71.395676	7
CCTATAC	25	0.0020454568	71.395676	8
GAAAACA	270	0.0	68.31068	1
GTACAAG	45	3.933088E-6	66.1071	1
GCCCATA	20	1.7644014E-4	59.496395	54-55
TCACCCA	30	0.004213198	59.496395	4
CTGTAGA	30	0.004213198	59.496395	1
GTACAAA	40	1.7555697E-4	59.496395	1
ATAGGCC	15	0.00422591	59.496395	58-59
TAGACCA	40	1.7555697E-4	59.496395	4
ATAGACT	30	0.004213198	59.496395	4
CCTGTGT	30	0.004213198	59.496395	8

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content