SRR936193_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936193_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	306870
Sequences flagged as poor quality	0
Sequence length	125
%GC	39

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1096	0.3571544953889269	No Hit
CTATTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATG	778	0.2535275523837456	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	708	0.2307165900870075	No Hit
GTTATAGATTAACCCAATTTTAAGTTTAGGAAGTTGGTGTAAATTATGGA	706	0.23006484830710075	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	688	0.22419917228793954	No Hit
ATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAACAAGAATTCC	653	0.2127936911395705	No Hit
GGATATGAGATTGGCTTGAAACCAATTTTAGGGGGTTCGATTCCTTCCTT	610	0.19878124287157428	No Hit
GTACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAG	586	0.19096034151269267	No Hit
GTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAAGTGAA	540	0.17597028057483624	No Hit
CTATAAGGCTATGATGAGCTCATGTAATTGAAACACCTGATGCTAGAAGT	525	0.17108221722553524	No Hit
TACTAACAGTGTTGCATCTATAAAGTTATAGATTAACCCAATTTTAAGTT	503	0.16391305764656044	No Hit
ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC	489	0.15935086518721284	No Hit
CCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTTATACGCGTAT	457	0.14892299670870401	No Hit
GACATATAGGATATGAGATTGGCTTGAAACCAATTTTAGGGGGTTCGATT	435	0.1417538371297292	No Hit
ATCTAGGAGGCTGCTGACCTCCAACAGGAATTTCACCACTTAACCCTCTA	434	0.1414279662397758	No Hit
GATATAGGCTTACTAGGAGGGTGAATACGTAGGCTTGAATTAATGCTACT	425	0.1384951282301952	No Hit
GAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTG	421	0.1371916446703816	No Hit
CCTTTAGGCATTCCGGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTAT	419	0.1365399028904748	No Hit
CTGTTAGTATGAGTAACAAGAATTCCAATTCTCCAGGCATACGCGTATAA	408	0.13295532310098737	No Hit
GTTATAGGTGGATTATTTATAGTGTGATTATTGCCTATAGTCTGATTAAC	407	0.132629452211034	No Hit
GATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAAC	405	0.1319777104311272	No Hit
GTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTC	404	0.1316518395411738	No Hit
GTATTAAGTAGTGGGACTTCTAGAGGGTTAAGTGGTGAAATTCCTGTTGG	402	0.13100009776126698	No Hit
ATTTTAGGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTT	389	0.1267637761918728	No Hit
GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC	388	0.12643790530191937	No Hit
GCTTTTAACCATTGTAGGCCTAAAAGCAGCCACCAATAAAGAAAGCGTTC	386	0.12578616352201258	No Hit
ATTATATATAGAATGCGTAGAGAGGGGAGAGCAATTATGATAAGGATTAC	381	0.12415680907224558	No Hit
CTCCTATTGTACAAAAAGGACTACGATATGGTATAATTCTATTCATCGTC	371	0.12089810017271156	No Hit
GAATTATACCATATCGTAGTCCTTTTTGTACAATAGGAGTGTGGTGGCCT	361	0.11763939127317757	No Hit
CCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTT	360	0.11731352038322418	No Hit
ATACTGATATTACTTCTCGTTTTGAAGCAAAGGCCTCTCAAATTATAAAG	355	0.11568416593345715	No Hit
ATATATAATAGACGAAATCAACAACCCCGTATTAACCGTTAAAACCATAG	346	0.11275132792387657	No Hit
CTCCTAGATCATGTGTTGGTACGAGGCTAGAATGATAGAACGCTCAGAAG	335	0.10916674813438916	No Hit
GTTATACGCGTATGCCTGGAGAATTGGAATTCTTGTTACTCATACTAACA	331	0.10786326457457557	No Hit
GTATTGGAATTAGTGAAATTGGAGTTCCTTGTGGAAGGAAGTGGGCAAGT	330	0.10753739368462216	No Hit
CTATTAAAGGTTTTTTCCGTTCCAGAAGAGCTGTCCCTCTTTTGGCTATA	325	0.10590803923485514	No Hit
AATCTAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAAAATT	322	0.10493042656499496	No Hit
CTATGTAGTAGCCCATTTCCACTATGTTCTATCAATGGGAGCAGTGTTTG	321	0.10460455567504155	No Hit
CCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATGACGAGAC	311	0.10134584677550754	No Hit
GTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCC	310	0.10101997588555414	No Hit
GTATAATGGTAATTAGTAGGGCTTGATTTATGTGGTTTCGTTTACCTTCT	309	0.10069410499560073	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGTCG	20	8.479268E-4	89.24034	9
GGTATCA	815	0.0	83.34021	1
GCAGTAT	25	0.002056289	71.39227	8
TCGGCGC	25	0.002056289	71.39227	9
GTATGGT	40	1.7580652E-4	59.58094	1
GTGGTAC	60	3.1160926E-7	59.580936	1
AGAGCGC	30	0.004224488	59.532364	5
GTATGCG	15	0.0042292303	59.522655	110-111
GTGCGAG	15	0.0042360607	59.49841	38-39
CTCCCGC	70	1.3384124E-8	59.493565	7
AGCGTTA	15	0.004237428	59.49356	88-89
AGTTGCG	15	0.004237428	59.49356	24-25
GAGCGCT	30	0.0042354115	59.49356	6
GCGCTTA	30	0.0042354115	59.49356	8
AGGCTTA	170	0.0	55.993946	6
ATGGGAC	130	0.0	54.95295	5
TGGTACT	65	5.447673E-7	54.95295	2
GGTATAG	35	0.007749074	51.069378	1
ATAGACC	35	0.0077741044	51.027744	3
GAGAGCG	35	0.0077741044	51.027744	4

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content