SRR936173_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936173_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399350
Sequences flagged as poor quality	0
Sequence length	77
%GC	24

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66466	16.643545761863027	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	56387	14.119694503568297	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1307	0.3272818329785902	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	748	0.18730436960060098	No Hit
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	622	0.15575309878552648	No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG	443	0.11093026167522224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACCGA	25	2.2289617E-4	56.792084	16
TCTAGCG	25	2.2303418E-4	56.784973	4
CGAATGC	20	0.006573286	53.242584	19
CAATACG	20	0.006573286	53.242584	14
AATACGA	20	0.006573286	53.242584	15
CTAGCGG	20	0.006576543	53.235912	5
TACCGAG	30	5.481801E-4	47.326736	17
TCTACCG	40	0.0022565825	35.495056	15
CGGCCGT	40	0.0022579697	35.49061	29
ATAGTTG	45	0.004011758	31.563015	60
GGACATC	50	0.0067191017	28.403158	53
GCATCTC	50	0.0067314436	28.392487	3
CTCGAAC	65	7.318486E-4	27.307306	23
GAGTACT	95	8.417459E-6	26.150974	6
CGAACTC	75	0.0016860387	23.666332	25
GGGTAAT	100	3.5750703E-4	21.294365	3
GGCCTCG	85	0.003488012	20.882057	25
GGAACTC	120	5.1209405E-5	20.705448	1
TAAGAGG	90	0.004856281	19.721943	23
ATCTAGT	90	0.004859801	19.719475	15