SRR936172_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936172_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399576
Sequences flagged as poor quality	0
Sequence length	77
%GC	24

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66793	16.715968927062686	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	56838	14.2245780527359	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1282	0.3208400904959257	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	709	0.1774380843694316	No Hit
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	669	0.1674274731215088	No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG	423	0.10586221394678359	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCCG	15	0.0021005985	71.01353	46
CTCGAGT	15	0.0021026866	70.99574	56
GATCCGA	25	2.225331E-4	56.81082	47
ATACGAA	25	2.2267087E-4	56.80371	16
AGGGCCG	25	2.2267087E-4	56.80371	19
CAATACG	25	2.2267087E-4	56.80371	14
CCGATCC	20	0.006571224	53.246807	45
GGCCGTG	20	0.006571224	53.246807	21
GGGCCGT	30	5.476275E-4	47.336422	20
AATACGA	30	5.476275E-4	47.336422	15
CGCCAGG	30	5.476275E-4	47.336422	15
GTGGGCC	30	5.4796576E-4	47.330498	25
CGCAATA	30	5.483041E-4	47.324574	12
GCGCAAT	30	5.4864265E-4	47.31865	11
TCAGCGC	30	5.4932025E-4	47.306805	6
CTCAGCG	30	5.4932025E-4	47.306805	5
TACGAAT	35	0.0011698671	40.574078	17
GCGCTCC	35	0.0011720306	40.558838	9
AGCGCTC	35	0.0011727525	40.553764	8
CAGCGCT	35	0.0011734747	40.54869	7