SRR936171_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936171_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	682734
Sequences flagged as poor quality	0
Sequence length	77
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31332	4.589195792211901	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20406	2.9888653560537484	No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG	1226	0.17957213204556974	No Hit
GACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTAC	875	0.12816118722665049	No Hit
AGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCG	794	0.11629712303766913	No Hit
TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC	728	0.1066301077725732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTCGG	20	0.006561841	53.27012	65
TTACGTA	20	0.0065656467	53.26231	46
AACCGTC	20	0.006573264	53.2467	19
CGGTATA	60	4.594703E-4	29.572834	10
CGTTAGG	50	0.006732894	28.394081	29
CGTCAAC	115	4.2831743E-8	27.772747	4
CGCGTCA	115	4.2862666E-8	27.770714	2
ACCGGGT	85	1.1886356E-4	25.057272	36
GCGTCAA	130	1.4057332E-7	24.5664	3
TGCGGAA	75	0.0016870112	23.666933	61
ATTTGCG	340	0.0	21.917084	3
TCGCGAT	115	3.6916186E-5	21.607357	26
TCGCGTC	170	8.029747E-8	20.878	1
GCGGTAT	85	0.003497417	20.874943	9
TTCGCGA	105	4.9673294E-4	20.284458	25
GCCAATC	140	7.3004976E-6	20.282972	57
TTGCGCG	370	0.0	20.141499	5
ATACTCG	90	0.00485903	19.722446	23
CGATTAT	95	0.006640799	18.684423	60
ACTATCA	95	0.0066464194	18.681684	39