SRR936170_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR936170_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	683783
Sequences flagged as poor quality	0
Sequence length	77
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30864	4.513712683702285	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20322	2.97199550149682	No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG	1210	0.1769567245749017	No Hit
GACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTAC	870	0.12723334742162354	No Hit
AGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCG	760	0.11114637246026882	No Hit
TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC	713	0.10427284679496274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAATCG	40	0.0022501769	35.51922	71
CGATCCG	60	1.1024538E-5	35.503624	46
TTCGCGA	50	0.0067275055	28.398743	25
TGACACG	50	0.0067347204	28.39251	2
CGATTAT	65	7.312624E-4	27.314478	60
CGGTATA	65	7.3282776E-4	27.304485	10
GTGGGTA	180	9.094947E-12	25.632126	1
GCGCTCC	105	1.8288036E-5	23.663887	9
GGCCGAC	120	1.9222334E-6	23.656965	28
TAGCTTA	80	0.0024579915	22.183271	4
GATCCGA	100	3.569815E-4	21.302174	47
ATGGCGG	85	0.003494093	20.878372	6
TATATAG	120	5.1211508E-5	20.708931	13
TCAGCGC	105	4.9716537E-4	20.281849	6
ATTTGCG	385	0.0	20.281847	3
ATCGATT	90	0.004854435	19.725677	58
GAGTGGT	95	0.0066457484	18.682016	14
GTGCTAC	95	0.0066457484	18.682016	16
ACGTAGG	95	0.006648556	18.680649	3
TAGTATG	95	0.006648556	18.680649	5