Basic Statistics
Measure | Value |
---|---|
Filename | SRR936144_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 508842 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8641 | 1.6981695693358647 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6652 | 1.307282024675636 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5444 | 1.069880237873446 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2228 | 0.4378569379099996 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1765 | 0.34686602127968996 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1339 | 0.2631465169934872 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1230 | 0.2417253292770644 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1194 | 0.23465044159090642 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1002 | 0.1969177072647305 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 928 | 0.18237488257651688 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTAGCGA | 30 | 0.0042361803 | 59.496513 | 6 |
CGTATCA | 440 | 0.0 | 54.10901 | 100-101 |
GGTATCA | 4270 | 0.0 | 52.127068 | 1 |
TACGCAG | 355 | 0.0 | 50.29851 | 100-101 |
ACGTATC | 135 | 0.0 | 48.497704 | 100-101 |
CGCGAGT | 25 | 5.327398E-4 | 47.608906 | 98-99 |
CGGTATC | 330 | 0.0 | 46.89447 | 100-101 |
AGTATCA | 1155 | 0.0 | 46.63681 | 100-101 |
GCGTATC | 90 | 0.0 | 46.293262 | 100-101 |
CGTACAT | 460 | 0.0 | 45.286884 | 100-101 |
CCGTACA | 185 | 0.0 | 45.04209 | 100-101 |
ACGGTAT | 80 | 0.0 | 44.639927 | 100-101 |
ACCGTAC | 60 | 4.1654857E-10 | 44.63335 | 98-99 |
AGGTATC | 740 | 0.0 | 44.23777 | 100-101 |
TTTACGC | 195 | 0.0 | 42.72594 | 98-99 |
CGACGCA | 70 | 4.0017767E-11 | 42.51422 | 100-101 |
GGCGTAC | 35 | 5.445516E-5 | 42.507954 | 98-99 |
GTCTCGC | 35 | 5.4470947E-5 | 42.505863 | 96-97 |
TCTACGC | 50 | 2.2219501E-7 | 41.65779 | 98-99 |
TTCGGTA | 50 | 2.2219501E-7 | 41.65779 | 98-99 |